@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XXX4: (2018-01-06 )
MTQISIAIDGPASSGKSTVAKILAKELNYIYTDTGAMYRAVTYLAITNNVSFSDEEGLVSLIKKYPISFSQQEDGQHVFIASKDVTLEIRQPDVTKAVSEVSAHGKVREELVAVQRKIGERGGVVMDGRDIGTAVLPNAEVKIFLVASVSERAERRFKENQEKGIPTDLETLTKEIQERDHYDSTRDVSPLKQAEDAVRIDTTGKSIPEVVAAIKAVVLKKGYLLF

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CDP_D_4(2CMK)
KCY_ECOLI
[Raw transfer]



C_E_5(1KDP)
KCY_ECOLI
[Raw transfer]



C5P_H_8(2H92)
KCY_STAAW
[Raw transfer]



C_H_8(1KDO)
KCY_ECOLI
[Raw transfer]



CAR_F_6(1KDR)
KCY_ECOLI
[Raw transfer]



C_I_9(1KDO)
KCY_ECOLI
[Raw transfer]



C5P_I_9(2H92)
KCY_STAAW
[Raw transfer]



CDP_A_2(3AKD)
KCY_THET8
[Raw transfer]



C5P_I_9(2H92)
KCY_STAAW
[Raw transfer]



C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]



C_F_6(1KDP)
KCY_ECOLI
[Raw transfer]



CAR_G_7(1KDR)
KCY_ECOLI
[Raw transfer]



DOC_F_6(1KDT)
KCY_ECOLI
[Raw transfer]



C5P_C_9(4DIE)
?
[Raw transfer]



C5P_C_9(4DIE)
?
[Raw transfer]



DC_C_3(2FEO)
KCY_ECOLI
[Raw transfer]



C5P_A_5(4DIE)
?
[Raw transfer]



DOC_G_7(1KDT)
KCY_ECOLI
[Raw transfer]



C5P_B_7(4DIE)
?
[Raw transfer]



C5P_D_11(4DIE)
?
[Raw transfer]



ADP_A_3(3AKC)
KCY_THET8
[Raw transfer]



DPO_A_2(3R20)
?
[Raw transfer]



DPO_A_2(3R20)
?
[Raw transfer]



ADP_A_3(3AKC)
KCY_THET8
[Raw transfer]



GD_A_4(3AKC)
KCY_THET8
[Raw transfer]



C5P_A_2(3AKE)
KCY_THET8
[Raw transfer]
1 PsiBlast_PDB 77.3161% -31 - C3 -1Q3T - KCY_STRPN -
63 Fugue 70.4538%-114 - C3 -1CKE - KCY_ECOLI -
73 HHSearch 70.0344% -52 * C3 *3R20 3.0 ?
75 HHSearch 68.7744% -59 - C3 -4DIE 5.4 ?
5 PsiBlast_PDB 67.0246% -50 - C3 -3R20 3.9 ?
2 PsiBlast_PDB 66.1848% -6 - C3 -2H92 8.4 KCY_STAAW
22 PsiBlast_CBE 65.2648% -4 - C3 -2H92 8.5 KCY_STAAW
21 PsiBlast_CBE 65.1148% -3 - C3 -2H92 9.3 KCY_STAAW
76 HHSearch 64.5749% 8 - C3 -2H92 9.3 KCY_STAAW
4 PsiBlast_PDB 64.2047% -67 - C3 -4DIE 5.3 ?
24 PsiBlast_CBE 64.0547% -56 - C3 -4DIE 5.4 ?
23 PsiBlast_CBE 62.3747% -69 - C3 -4DIE 5.6 ?
25 PsiBlast_CBE 62.0447% -67 - C3 -4DIE 6.0 ?
19 PsiBlast_PDB 59.3435% -81 - C2 -3W8N - KCY_THET8 -
18 PsiBlast_PDB 59.3435% -76 - C2 -3W90 - KCY_THET8 -
74 HHSearch 59.0744% - - C- -3R8C - ? -
17 PsiBlast_PDB 59.0535% -66 - C3 -3AKE - KCY_THET8 -
3 PsiBlast_PDB 58.9147% - - C- -3R8C - ? -
6 PsiBlast_PDB 58.7543% 36 - C3 -4E22 - KCY_YERPY -
16 PsiBlast_PDB 58.0635% -70 - C3 -3AKD 7.6 KCY_THET8
7 PsiBlast_PDB 58.0442% 30 - C3 -2CMK 5.7 KCY_ECOLI
15 PsiBlast_PDB 57.1935% -55 - C3 -3AKC 7.3 KCY_THET8
8 PsiBlast_PDB 56.9442% 31 - C3 -1KDO 8.7 KCY_ECOLI
28 PsiBlast_CBE 56.4642% 38 - C3 -1KDP 6.0 KCY_ECOLI
11 PsiBlast_PDB 56.4042% 34 - C3 -1KDT 6.2 KCY_ECOLI
26 PsiBlast_CBE 56.3442% 31 - C3 -1KDT 4.9 KCY_ECOLI
10 PsiBlast_PDB 56.0242% 38 - C3 -1KDR 5.3 KCY_ECOLI
9 PsiBlast_PDB 55.7842% 34 - C3 -1KDP 7.6 KCY_ECOLI
29 PsiBlast_CBE 55.4342% 35 - C3 -1KDO 8.7 KCY_ECOLI
27 PsiBlast_CBE 55.2942% 38 - C3 -1KDR 5.2 KCY_ECOLI
13 PsiBlast_PDB 52.9441% 27 - C3 -2FEO 4.5 KCY_ECOLI
78 HHSearch 24.4444%-131 - C3 -3AKC 4.8 KCY_THET8
77 HHSearch 23.6844%-129 - C3 -3AKE 3.6 KCY_THET8