@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XY74: (2018-01-08 )
MQIYDYIVIGGGSGGIASANRAGMHGAKVLLIEANELGGTCVNVGCVPKKVMWQASTILETIERDASSYGIQADLKNVDFAGLVERREKYIDFLHGAYQRGLDSNHVEAIKGYATFIDSQTIEVNGETYRAPKILIATGGRASKMTIPGGEYAIDSNGFFELTELPKRAIVLGAGYIAAELSGVFRGLGSEVMWAYRKERPLRTFDKMLSDNLIQMYQEAGIKTYAHHIAKEITKNNDEYTVLFENGETLTGDCVLFAGGRVPNTEKLGLENTNVELDKKGFIKVDKYQNTTDEHIFAVGDVIGKLDLTPVAIAAGRRLSERLFNGKKDSYLDYKLVPTVVFTHPPIATIGLTEEEALEKYGENELKVYRSRFTPMYFALNDYRQKCEMKLICVGKEERIVGLHAIGVGVDEMLQGFAVAIKMGATKEDFDNTVAIHPTGAEEFVTMR

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(2R9Z)
GASHR_MARGR
[Raw transfer]




FAD_A_3(2R9Z)
GASHR_MARGR
[Raw transfer]




FAD_C_3(1ZKQ)
TRXR2_MOUSE
[Raw transfer]




FAD_A_5(3DK9)
GSHR_HUMAN
[Raw transfer]




FAD_B_10(2R9Z)
GASHR_MARGR
[Raw transfer]




FAD_B_10(2R9Z)
GASHR_MARGR
[Raw transfer]




FAD_C_3(1ZDL)
TRXR2_MOUSE
[Raw transfer]




FAD_B_8(5VDN)
?
[Raw transfer]




FAD_C_3(2GRT)
GSHR_HUMAN
[Raw transfer]




FAD_X_2(3DJG)
GSHR_HUMAN
[Raw transfer]




FAD_B_10(2GH5)
GSHR_HUMAN
[Raw transfer]




FAD_A_3(1GER)
GSHR_ECOLI
[Raw transfer]




FAD_B_4(1GES)
GSHR_ECOLI
[Raw transfer]




FAD_C_3(1ONF)
GSHR_PLAFK
[Raw transfer]




FAD_C_3(1ONF)
GSHR_PLAFK
[Raw transfer]




NDP_A_12(3DJJ)
GSHR_HUMAN
[Raw transfer]




NDP_A_4(3DK4)
GSHR_HUMAN
[Raw transfer]




GOL_A_9(3DK8)
GSHR_HUMAN
[Raw transfer]




GOL_A_13(3DJJ)
GSHR_HUMAN
[Raw transfer]




GCG_E_5(1BZL)
TYTR_TRYCR
[Raw transfer]




RDS_B_10(5EBK)
?
[Raw transfer]




RDS_A_4(5EBK)
?
[Raw transfer]




PEG_A_6(2X8C)
?
[Raw transfer]




GCG_B_8(4ADW)
?
[Raw transfer]




GCG_A_5(4ADW)
?
[Raw transfer]




119 HHSearch 96.3357% -55 - C1 -5VDN 13.7 ?
101 HHSearch 95.9856% -58 - C1 -1GES 13.3 GSHR_ECOLI
6 PsiBlast_PDB 95.7956% -61 - C1 -1GES - GSHR_ECOLI -
21 PsiBlast_CBE 95.7358% -58 - C1 -5VDN - ? -
29 PsiBlast_CBE 95.4656% -59 - C1 -1GES - GSHR_ECOLI -
107 HHSearch 95.2157% -58 - C1 -5V36 - ? -
24 PsiBlast_CBE 95.1558% -58 - C1 -5V36 - ? -
23 PsiBlast_CBE 94.9657% -58 - C1 -1GER - GSHR_ECOLI -
1 PsiBlast_PDB 94.8758% -57 - C1 -5VDN - ? -
3 PsiBlast_PDB 94.6757% -60 - C1 -1GET - GSHR_ECOLI -
4 PsiBlast_PDB 94.2458% -58 - C1 -5V36 - ? -
22 PsiBlast_CBE 93.8957% -59 - C1 -1GET - GSHR_ECOLI -
2 PsiBlast_PDB 93.5757% -58 - C1 -1GER - GSHR_ECOLI -
28 PsiBlast_CBE 92.8656% -58 - C1 -1GEU - GSHR_ECOLI -
25 PsiBlast_CBE 92.6757% -55 - C1 -5U1O - ? -
5 PsiBlast_PDB 92.5157% -54 - C1 -5U1O - ? -
27 PsiBlast_CBE 92.2557% -53 - C1 -5U1O - ? -
40 PsiBlast_CBE 92.0448% -61 - C1 -2R9Z 13.1 GASHR_MARGR
7 PsiBlast_PDB 92.0056% -56 - C1 -1GEU - GSHR_ECOLI -
26 PsiBlast_CBE 91.9357% -54 - C1 -5U1O - ? -
104 HHSearch 90.9849% -58 - C1 -2R9Z 13.1 GASHR_MARGR
41 PsiBlast_CBE 90.2348% -61 - C1 -2R9Z 13.6 GASHR_MARGR
102 HHSearch 89.3949% -58 - C1 -2R9Z 13.6 GASHR_MARGR
103 HHSearch 82.9751% -15 - C1 -3DK9 13.6 GSHR_HUMAN
37 PsiBlast_CBE 82.1449% -15 - C1 -3DJJ 10.8 GSHR_HUMAN
35 PsiBlast_CBE 82.1049% -14 - C1 -3DK8 2.4 GSHR_HUMAN
38 PsiBlast_CBE 81.7949% -13 - C1 -3DJG 13.2 GSHR_HUMAN
117 HHSearch 79.6744% -46 - C1 -1ONF 10.1 GSHR_PLAFK
105 HHSearch 79.0451% -14 - C1 -2GRT 12.6 GSHR_HUMAN
42 PsiBlast_CBE 78.4340% -53 - C1 -1ONF 9.9 GSHR_PLAFK
39 PsiBlast_CBE 78.3349% -9 - C1 -2GH5 13.8 GSHR_HUMAN
124 Fugue 71.8753% 26 - C1 -1GER 13.2 GSHR_ECOLI
68 PsiBlast_CBE 66.7834% 3 - C1 -5EBK 3.2 ?
72 PsiBlast_CBE 65.3834% 4 - C1 -4ADW 3.7 ?
67 PsiBlast_CBE 65.0334% 2 - C1 -5EBK 4.6 ?
71 PsiBlast_CBE 64.8134% 4 - C1 -4ADW 1.8 ?
82 PsiBlast_CBE 64.5436% 0 - C1 -1ZKQ 11.7 TRXR2_MOUSE
83 PsiBlast_CBE 63.5536% 0 - C1 -1ZDL 12.7 TRXR2_MOUSE
65 PsiBlast_CBE 62.0936% 10 - C1 -2X8C 2.9 ?