@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XYF4: (2018-01-09 )
MKQEMMEIVQQKQLAPKIFEMTLKGDLVKEMQQPGQFLHILVPRADLLLRRPISLNHIDHETNTCRIIYRVEGEGTRVFSTLSAGDHLDVMGPLGNGFDLSNLHTGDEVFIIGGGIGVPPLYELSKQLVEKGIKPTHFLGFATHEVVYYEKEFNRLGETRIATDDGTYGMHGNVGNLLLGTKTEPTAVFACGSNGLLKTVEQLFSSHQNVQLSLESRMACGIGACYACVCHTPEDETGTKSVKVCDEGPIFKIGEVII

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_8(5KSW)
PYRK_LACLA
[Raw transfer]




FAD_B_4(1EP3)
PYRK_LACLM
[Raw transfer]




FAD_D_11(5KSW)
PYRK_LACLA
[Raw transfer]




FAD_B_4(1EP1)
PYRK_LACLM
[Raw transfer]




FAD_B_5(1EP2)
PYRK_LACLM
[Raw transfer]




FAD_B_4(1EP3)
PYRK_LACLM
[Raw transfer]




FAD_B_4(1EP3)
PYRK_LACLM
[Raw transfer]




FAD_D_11(5KSW)
PYRK_LACLA
[Raw transfer]




FMN_A_2(2PIA)
?
[Raw transfer]




27 HHSearch 83.1852% -27 - C2 -5KSW 10.6 PYRK_LACLA
1 PsiBlast_PDB 82.9152% -32 - C2 -5KSW 10.8 PYRK_LACLA
21 PsiBlast_CBE 82.0352% -31 - C2 -5KSW 11.3 PYRK_LACLA
22 HHSearch 81.6151% -23 - C2 -1EP3 9.0 PYRK_LACLM
2 PsiBlast_PDB 81.1850% -28 - C2 -1EP3 10.0 PYRK_LACLM
3 PsiBlast_PDB 81.0150% -38 - C2 -1EP1 9.6 PYRK_LACLM
42 Fugue 80.9249% -12 - C2 -1EP3 9.0 PYRK_LACLM
4 PsiBlast_PDB 80.4850% -35 - C2 -1EP2 9.6 PYRK_LACLM
25 HHSearch 69.8230% -50 - C2 -5JCA - SUDHB_PYRFU -
26 HHSearch 69.5030% -50 - C2 -5JFC - SUDHB_PYRFU -
7 PsiBlast_PDB 69.2530% -66 - C2 -5JCA - SUDHB_PYRFU -
8 PsiBlast_PDB 69.2230% -66 - C2 -5JFC - SUDHB_PYRFU -
5 PsiBlast_PDB 65.6929% -55 - C2 -4YLF - PYRKH_THEMA -
24 HHSearch 64.1629% -50 - C2 -4YLF - PYRKH_THEMA -
6 PsiBlast_PDB 63.5929% -44 - C2 -4YRY - PYRKH_THEMA -
23 HHSearch 63.0629% -47 - C2 -4YLF - PYRKH_THEMA -
28 HHSearch 61.1522% -48 - C2 -5VJ7 - ? -
29 HHSearch 55.1422% -3 - C2 -2PIA - PDR_BURCE -
41 HHSearch 53.2522% 1 - C2 -2R6H - ? -
32 HHSearch 49.7221% 16 * C2 *4P6V - NQRF_VIBCH -