@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XYG9: (2018-01-09 )
MKRKVRFFRSVNFKIAITFILILLISIEIIGAYFIRGLERSTINTFIKDMNQTVESLATTISPELNRKDNADDEEVNANIKRFIENSATSDIIEIRVVDEKGIIRGTTDVNEQSAVGKKNDYVDINDFTTKRYVALDNDDKRVNINVQPILSPTGDAVIGALYVKSNIEQKYSEINNTAVIFFTASLIAAFISMIVSVLVARSITQPIGEMREQAIRIARGDYSRKVKVHGQDELGQLADTFNQLAERIEEAQDTMEAERNRLDSVLSHMTDGVIATDRRGKVITINDMAVSLLDIKNEEAIGQSILTLLDIEEEYTLRKLLEDPNEMVLDRSTSTLESDQMILRVDFSMIRRESGFISGLVAVLHDVTEQEKTERERREFVSNVSHELRTPLTSMRSYIEALSEGAWKDEEVAPNFLKVTLDETDRMIRMINDLLNLSRMDTGNTQLQLEYVNFNELVNFVLDRFDMMVGNQEKNYKIRREFTQRDLWVEVDTDKIIQVVDNIMNNAIKYSPDGGTITCRLLETHNNVVLSITDQGLGIPKKDLNRVFERFYRVDKARARAQGGTGLGLAISREVIKAHRGAIWAESKEGKGSTFYISLPYEPYEEEWWE

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(4BIW)
CPXA_ECOLI
[Raw transfer]




AN2_B_4(4U7O)
?
[Raw transfer]




ACP_A_3(5C93)
?
[Raw transfer]




AN2_A_3(4U7O)
?
[Raw transfer]




AN2_A_3(4U7O)
?
[Raw transfer]




ADP_B_3(4ZKI)
?
[Raw transfer]




ACP_A_3(5C93)
?
[Raw transfer]




ATP_A_5(5LFK)
?
[Raw transfer]




ATP_A_4(3SL2)

[Raw transfer]




ADP_A_7(3DGE)
?
[Raw transfer]




ADP_A_8(4JAV)
?
[Raw transfer]




ACP_B_7(5C93)
?
[Raw transfer]




ADP_A_8(4JAV)
?
[Raw transfer]




ADP_A_3(4JAS)
?
[Raw transfer]




ADP_B_8(3DGE)
?
[Raw transfer]




ADP_A_2(2C2A)
?
[Raw transfer]




ADP_A_2(2C2A)
?
[Raw transfer]




ADP_A_3(4BIX)
CPXA_ECOLI
[Raw transfer]




ADP_A_2(4JAU)
?
[Raw transfer]




49 HHSearch 86.9351% - - C4 -4I5S - ? -
39 Fugue 83.6852% - - C4 -4I5S - ? -
1 PsiBlast_PDB 83.4256% - - C4 -4I5S - ? -
5 PsiBlast_PDB 66.7873% 21 - C4 -5C93 7.3 ?
55 HHSearch 66.2074% 19 - C4 -5C93 7.3 ?
3 PsiBlast_PDB 66.0171% 29 - C4 -4U7O 9.1 ?
54 HHSearch 65.9272% 23 - C4 -4U7O 9.1 ?
4 PsiBlast_PDB 64.4671% 21 - C4 -4ZKI - ? -
2 PsiBlast_PDB 59.3471% - - C4 -4U7N - ? -
22 PsiBlast_CBE 57.1471% 28 - C4 -4U7O 9.5 ?
23 PsiBlast_CBE 56.8773% 24 - C4 -5C93 7.4 ?
21 PsiBlast_CBE 53.9371% 29 - C4 -4ZKI 6.9 ?
19 PsiBlast_PDB 53.4030% -92 - C4 -5LFK 7.5 ?
17 PsiBlast_PDB 53.1330%-104 - C4 -4BIX 5.7 CPXA_ECOLI
18 PsiBlast_PDB 52.9130%-110 - C4 -4BIY - CPXA_ECOLI -
20 PsiBlast_PDB 51.7730%-101 - C4 -4BIU - CPXA_ECOLI -
29 PsiBlast_CBE 50.9931% -94 - C4 -3A0T - ? -
53 HHSearch 50.3032%-110 - C4 -4BIX - CPXA_ECOLI -
16 PsiBlast_PDB 50.1630% -79 - C4 -4BIW 8.3 CPXA_ECOLI
28 PsiBlast_CBE 49.8031% -97 - C4 -3A0W - ? -
6 PsiBlast_PDB 47.2348% -54 - C4 -3SL2 7.7
9 PsiBlast_PDB 43.9334% 28 - C4 -4JAV 9.0 ?
7 PsiBlast_PDB 43.7734% 32 - C4 -2C2A 7.5 ?
11 PsiBlast_PDB 43.5933% 27 - C4 -4JAU 6.8 ?
25 PsiBlast_CBE 42.9034% 37 - C4 -3DGE 8.1 ?
57 HHSearch 42.6235% 48 * C4 *2C2A 7.5 ?
10 PsiBlast_PDB 42.2233% 28 - C4 -4JAS 9.1 ?
8 PsiBlast_PDB 41.8434% 28 - C4 -3DGE 6.9 ?
58 HHSearch 41.7634% 52 - C4 -4JAV 9.0 ?