@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XYQ5: (2018-01-10 )
MSKQQIGVVGMAVMGKNLALNIESRGYSVALFNRTGAKTTAVVEEHPDKNFKATYTIEEFVESIEKPRRILLMVKAGPATDATIQELLPHLDKGDILIDGGNTFFKDTMRRNEELANSGINFIGTGVSGGEEGALKGPSIMPGGQKEAYALVAPILEQISAKAEDGAPCVTYIGPNGAGHYVKMVHNGIEYGDMQLIAESYDLMKNILNLSVEEMADIFKEWNQGELDSYLIEITADILTRKDDEGTGKPVVDVILDAAGNKGTGKWTSQSALDLGVPLPLITESVFARYISAYKEERVQASKILSRTNDFEFTGDKKELVEKIREALYFSKIMSYAQGFAQLRVASKEFDWDLPFGEIAKIWRAGCIIRARFLQKITDAYDKNPEIENLLLDDYFVEITKKYQQSVRDVVALAVQAGVPVPTFSSAIAYFDSYRAERLPANIIQAQRDYFGAHTYERVDKEGIFHYSWYHEE

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

6PG_A_3(2W90)
?
[Raw transfer]



6PG_A_3(3FWN)
6PGD_ECOLI
[Raw transfer]



6PG_B_5(3FWN)
6PGD_ECOLI
[Raw transfer]



6PG_B_4(2ZYA)
6PGD_ECOLI
[Raw transfer]



6PG_A_2(2IYO)
6PGD_LACLM
[Raw transfer]



6PG_A_3(2ZYA)
6PGD_ECOLI
[Raw transfer]



6PG_A_2(2IYO)
6PGD_LACLM
[Raw transfer]



6PG_C_3(1PGP)
6PGD_SHEEP
[Raw transfer]



GLO_A_3(2ZYD)
6PGD_ECOLI
[Raw transfer]



6PG_A_3(2W8Z)
?
[Raw transfer]



NDP_G_7(1PGO)
6PGD_SHEEP
[Raw transfer]



6PG_B_7(2W8Z)
?
[Raw transfer]



NBP_A_4(1PGN)
6PGD_SHEEP
[Raw transfer]



ATR_B_4(3FWN)
6PGD_ECOLI
[Raw transfer]



3PG_A_5(4GWK)
6PGD_HUMAN
[Raw transfer]



2AM_I_9(1PGQ)
6PGD_SHEEP
[Raw transfer]



MES_A_3(4GWG)
6PGD_HUMAN
[Raw transfer]



MES_A_3(4GWG)
6PGD_HUMAN
[Raw transfer]



MES_A_4(4GWK)
6PGD_HUMAN
[Raw transfer]



TRS_A_4(2W90)
?
[Raw transfer]



TRS_A_4(2W90)
?
[Raw transfer]
5 PsiBlast_PDB 88.7372% -98 - C1 -3FWN 4.6 6PGD_ECOLI
75 HHSearch 88.4272%-100 - C1 -2ZYD - 6PGD_ECOLI -
7 PsiBlast_PDB 88.1671% -99 - C1 -2ZYD - 6PGD_ECOLI -
8 PsiBlast_PDB 88.1472% -97 - C1 -2ZYG - ? -
31 PsiBlast_CBE 88.0568%-101 - C1 -2W90 2.7 ?
27 PsiBlast_CBE 88.0372% -96 - C1 -3FWN 6.0 6PGD_ECOLI
28 PsiBlast_CBE 87.9471% -94 - C1 -2ZYD 3.2 6PGD_ECOLI
73 HHSearch 87.8168%-101 - C1 -2W90 2.7 ?
29 PsiBlast_CBE 87.4571% -95 - C1 -2ZYA 3.9 6PGD_ECOLI
6 PsiBlast_PDB 87.3871% -99 - C1 -2ZYA 3.9 6PGD_ECOLI
10 PsiBlast_PDB 87.3668%-103 - C1 -2W90 4.4 ?
9 PsiBlast_PDB 87.2968%-100 - C1 -2W8Z 3.4 ?
30 PsiBlast_CBE 86.6168%-101 - C1 -2W8Z 2.7 ?
23 PsiBlast_CBE 86.0776% -49 - C1 -2IZ1 - 6PGD_LACLM -
25 PsiBlast_CBE 85.9776% -51 - C1 -2IZ0 - 6PGD_LACLM -
26 PsiBlast_CBE 85.5676% -48 - C1 -2IZ0 - 6PGD_LACLM -
24 PsiBlast_CBE 85.5576% -46 - C1 -2IZ1 - 6PGD_LACLM -
21 PsiBlast_CBE 85.5476% -48 - C1 -2IYP - 6PGD_LACLM -
3 PsiBlast_PDB 85.5376% -46 - C1 -2IZ0 - 6PGD_LACLM -
4 PsiBlast_PDB 85.3176% -46 - C1 -2IZ1 - 6PGD_LACLM -
1 PsiBlast_PDB 85.0176% -44 - C1 -2IYO 3.9 6PGD_LACLM
78 HHSearch 80.7076% -10 - C1 -2IYO 3.9 6PGD_LACLM
14 PsiBlast_PDB 75.9754% -29 - C1 -1PGP 3.2 6PGD_SHEEP
12 PsiBlast_PDB 74.9354% -30 - C1 -1PGN 8.0 6PGD_SHEEP
17 PsiBlast_PDB 74.7754% -29 - C1 -4GWG 2.8 6PGD_HUMAN
76 HHSearch 74.6853% -30 - C1 -4GWG 2.8 6PGD_HUMAN
18 PsiBlast_PDB 74.1654% -28 - C1 -4GWK 3.4 6PGD_HUMAN
13 PsiBlast_PDB 73.9654% -31 - C1 -1PGO 7.7 6PGD_SHEEP