@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XYR6: (2018-01-10 )
MEQIQIIDSKNHVGETVTIGAWVANKRSSGKIAFLQLRDGTAFFQGVVVKSEVSEEVFQTAKNLHQETSVLVTGEIREDSRSKFGYEIGITNVEVVSESHDYPITPKEHGTDFLMDHRHLWLRSSRQHAIMQIRNEIIRATYEFFNQHHFVKIDPPILTGSAPEGTTDLFETNYFDQKAYLSQSGQLYMEAAAMAFGKVFSFGPTFRAEKSKTRRHLIEFWMIEPEMAFTHQEESLEVQEQYVAFLVQNVLDHCEYALDVLGRDKEVLKTYTKLPFPRITYDDAIELLKKNGFDDIEWGEDFGSPHETFIANSFEQPVFILNYPKAIKPFYMKPHPTREDVVICADMIAPEGYGEIIGGSERATDYDFLLEQIRNHGLDEKEYSWYLDLRKYGSVPHSGFGLGLERTVTWIAGIDHVREAIPFPRLLNRIYP

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NSS_A_5(1X55)
SYN_PYRHO
[Raw transfer]



NSS_A_5(1X55)
SYN_PYRHO
[Raw transfer]



4AD_A_3(1X54)
SYN_PYRHO
[Raw transfer]



4AD_A_3(1X54)
SYN_PYRHO
[Raw transfer]



AMO_A_3(3NEM)
SYD_THEKO
[Raw transfer]



NB8_A_3(2XTI)
?
[Raw transfer]



NSS_A_4(2XGT)
?
[Raw transfer]



ATP_B_4(3NEM)
SYD_THEKO
[Raw transfer]



ATP_A_9(1B8A)
SYD_THEKO
[Raw transfer]



ATP_B_10(1B8A)
SYD_THEKO
[Raw transfer]



ATP_B_8(2XTI)
?
[Raw transfer]



ASP_A_3(3NEL)
SYD_THEKO
[Raw transfer]



EPE_A_7(1WYD)
SYDND_SULTO
[Raw transfer]



EPE_B_8(1WYD)
SYDND_SULTO
[Raw transfer]
1 PsiBlast_PDB 93.1345% 2 - C6 -1X54 8.3 SYN_PYRHO
2 PsiBlast_PDB 93.1145% -0 - C6 -1X55 7.8 SYN_PYRHO
51 HHSearch 93.0944% -2 - C6 -1X55 7.8 SYN_PYRHO
52 HHSearch 92.7644% 1 - C6 -1X54 8.3 SYN_PYRHO
3 PsiBlast_PDB 91.0445% -8 - C6 -1X56 - SYN_PYRHO -
10 PsiBlast_PDB 82.9332% -9 - C6 -2XTI 8.3 ?
26 PsiBlast_CBE 82.8832% -15 - C6 -2XTI 6.3 ?
23 PsiBlast_CBE 81.8533% 3 - C6 -3M4P - ? -
6 PsiBlast_PDB 81.5934% 2 - C6 -3NEL 2.7 SYD_THEKO
4 PsiBlast_PDB 81.0333% 5 - C6 -3M4P - ? -
47 HHSearch 80.7834% -4 - C6 -3I7F - ? -
56 HHSearch 80.5334% 6 - C6 -3NEL - SYD_THEKO -
21 PsiBlast_CBE 80.4433% 5 - C6 -3M4P - ? -
58 HHSearch 80.3034% -2 - C6 -3M4P - ? -
57 HHSearch 80.2534% 10 - C6 -3NEM - SYD_THEKO -
8 PsiBlast_PDB 80.0634% -0 - C6 -3NEN - SYD_THEKO -
48 HHSearch 79.9134% 2 - C6 -3I7F - ? -
11 PsiBlast_PDB 79.5532% -2 - C6 -2XGT 7.9 ?
22 PsiBlast_CBE 79.1033% 2 - C6 -3M4P - ? -
24 PsiBlast_CBE 78.9734% 3 - C6 -3NEM 7.2 SYD_THEKO
9 PsiBlast_PDB 78.5933% 5 - C6 -1B8A 6.9 SYD_THEKO
25 PsiBlast_CBE 78.3933% 4 - C6 -1B8A 7.3 SYD_THEKO