@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XYT3: (2018-01-10 )
MPEHKSGFVAIVGRPNVGKSTLLNRIVGQKIAIMSDKAQTTRNKIQGVYTTPEAQLIFIDTPGIHKPKHRLGDFMVEAAYSALKEVDAVLFMISADQKRGRGDDFIIERLKNVHSPVYLIINKIDKIHPDELLGIIEDYSTQMPFAQVIPISATEGNNVERLMDVLVSEMPEGPQYFPDDQVTDHPEYFIVSELIREKVLFLTRDEVPHSVAVVVDSMKRNENDKIHIQATIIVERDSQKGIIIGKGGKMLKQVGTKARKDIENLLGDKVFLELWVKVQKDWRDKKVYLQDFGYRKDEY

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_B_10(3IEU)
ERA_ECOLI
[Raw transfer]



GDP_A_3(3IEU)
ERA_ECOLI
[Raw transfer]



GNP_A_4(3R9W)
ERA_AQUAE
[Raw transfer]



GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]



GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]



GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]



GDP_B_8(4KYU)
DER_BACSU
[Raw transfer]



GDP_A_4(2HJG)
DER_BACSU
[Raw transfer]



GDP_A_3(4KYU)
DER_BACSU
[Raw transfer]



GDP_B_8(5X4B)
?
[Raw transfer]



GDP_A_3(5X4B)
?
[Raw transfer]



GDP_A_3(5X4B)
?
[Raw transfer]



GDP_A_3(4DCU)
DER_BACSU
[Raw transfer]
5 PsiBlast_PDB 76.6640% - - C1 -1X1L - ERA_THET8 -
72 HHSearch 76.5440% - - C1 -1X18 - ERA_THET8 -
7 PsiBlast_PDB 75.8939% - - C1 -1X18 - ERA_THET8 -
3 PsiBlast_PDB 72.7845% 4 - C1 -3IEV 9.6 ERA_AQUAE
74 HHSearch 72.5946% 2 - C1 -3IEV 9.5 ERA_AQUAE
1 PsiBlast_PDB 72.5445% 7 - C1 -3R9W 9.1 ERA_AQUAE
73 HHSearch 71.4046% 5 - C1 -3R9X 8.8 ERA_AQUAE
2 PsiBlast_PDB 71.1245% 8 - C1 -3R9X 8.8 ERA_AQUAE
8 PsiBlast_PDB 69.1340% -33 - C1 -1WF3 - ERA_THET8 -
70 HHSearch 67.8340% -13 - C1 -1EGA - ERA_ECOLI -
71 HHSearch 66.4540% 2 - C1 -1WF3 - ERA_THET8 -
21 PsiBlast_CBE 65.7640% -12 - C1 -3IEU 7.5 ERA_ECOLI
6 PsiBlast_PDB 65.3540% -12 - C1 -3IEU 7.6 ERA_ECOLI
4 PsiBlast_PDB 64.6740% -10 - C1 -1EGA - ERA_ECOLI -
94 HHSearch 50.8032%-143 * C1 *5X4B 7.6 ?
12 PsiBlast_PDB 49.7133%-154 - C1 -5X4B 7.6 ?
23 PsiBlast_CBE 48.8833%-175 - C1 -5X4B 7.8 ?
24 PsiBlast_CBE 48.8633%-182 - C1 -4KYU 7.3 DER_BACSU
13 PsiBlast_PDB 48.8433%-155 - C1 -4KYU 6.5 DER_BACSU
10 PsiBlast_PDB 48.5231%-165 - C1 -4DCU 7.1 DER_BACSU
14 PsiBlast_PDB 45.6231%-179 - C1 -2HJG 6.7 DER_BACSU