@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XZ72: (2018-01-12 )
MKVHQAEIIISAVAPKQYPDTQLPEIALAGRSNVGKSSFINTLIDRKNLARTSGKPGKTQTLNFYLIENALHFVDVPGYGYAKVSKTERAKWGKMIETYLTTRDQLRAVVSLVDLRHKPSQEDIQMYQFLKYYDIPVIVVATKADKIPRGKWNKHESEIKKALDFDRNDTFILFSSVTKQGKEEAWAAIEQAIES

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_B_6(1SVW)
ENGB_BACSU
[Raw transfer]




GDP_A_3(3PQC)
ENGB_THEMA
[Raw transfer]




GDP_B_2(1SVI)
ENGB_BACSU
[Raw transfer]




GDP_B_2(1SVI)
ENGB_BACSU
[Raw transfer]




GDP_B_5(3PQC)
ENGB_THEMA
[Raw transfer]




GDP_B_5(3PQC)
ENGB_THEMA
[Raw transfer]




GDP_A_4(5UCV)
ENGB_NEIG2
[Raw transfer]




GDP_A_4(5UCV)
ENGB_NEIG2
[Raw transfer]




GOL_B_8(5UCV)
ENGB_NEIG2
[Raw transfer]




GOL_B_8(5UCV)
ENGB_NEIG2
[Raw transfer]




62 HHSearch 95.1871%-116 * C1 *1SUL - ENGB_BACSU -
63 HHSearch 91.8271%-137 - C1 -1SVI 6.7 ENGB_BACSU
2 PsiBlast_PDB 91.3470%-138 - C1 -1SVI 6.7 ENGB_BACSU
1 PsiBlast_PDB 89.9970%-137 - C1 -1SUL - ENGB_BACSU -
21 PsiBlast_CBE 87.9070%-116 - C1 -1SVW 7.1 ENGB_BACSU
3 PsiBlast_PDB 79.1240%-121 - C1 -3PQC 7.7 ENGB_THEMA
68 HHSearch 78.6242%-124 - C1 -3PQC 6.9 ENGB_THEMA
22 PsiBlast_CBE 78.4640%-125 - C1 -3PQC 6.9 ENGB_THEMA
4 PsiBlast_PDB 76.7440%-155 - C1 -3PR1 - ENGB_THEMA -
67 HHSearch 69.5336%-111 - C1 -1PUI - ENGB_ECOLI -
5 PsiBlast_PDB 68.5644%-107 - C1 -5UCV 6.0 ENGB_NEIG2
66 HHSearch 66.4840% -99 - C1 -5UCV 6.0 ENGB_NEIG2
6 PsiBlast_PDB 66.2436%-110 - C1 -1PUI - ENGB_ECOLI -
83 Fugue 65.6633%-120 - C1 -1PUI - ENGB_ECOLI -
64 HHSearch 65.0836% -7 - C1 -4DHE - ENGB_BURTA -
23 PsiBlast_CBE 63.8644% -98 - C1 -5UCV 2.2 ENGB_NEIG2
7 PsiBlast_PDB 63.6535% -14 - C1 -4DHE - ENGB_BURTA -
65 HHSearch 62.1140% -92 - C1 -5UCV 2.2 ENGB_NEIG2
75 HHSearch 53.4927% 39 - C1 -3IEV - ERA_AQUAE -
78 HHSearch 52.7923% -18 - C1 -2WJI - FEOB_METJA -