@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XZD2: (2018-01-13 )
MITVNDVSLHFSDRKLFDDVNIKFTPGNCYGLIGANGAGKSTFLKVLSGDLQPSTGSVTMGPDERMAVLKQNHYDYEDYTVLETVIMGHKRLYEVLKEKDAIYMKEDFTDEDGIRAAELEGEFAELNGWEAEPEAAVLLQGLNIPEELHHQQMSELTGGQKVKVLLAQTLFGKPDVLLLDEPTNGLDIQSINWLEEFLINFENTVIVVSHDRHFLNKVCTHMADLDFGKIKLYVGNYDFWLESSQLAAKLQANANAKKEEQIKELQEFIARFSANASKSKQATSRKKMLEKITLDDIQPSSRRYPFVGFKPEREIGNDLLQVENVSVTIDGKKILDDISFNLSKEDKVAFVAENDITTTTLFKVIMGEITPDTGTVRWGVTTSNSYLPKDTTKEFDTDLTILDWLRQYASKEEDDNTFLRSFLGRMLFSGEEVLKPVNVLSGGEKVRCMLSKMMLSKANVLVLDDPTNHLDLESITALNDGLMAFTGSILFASHDHQFIQTLANRIIAVSDKGVIDRADTTYDEFLENADIQKQLNELWA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_P_3(4CRM)
RLI1_YEAST
[Raw transfer]



ADP_B_4(3J15)
?
[Raw transfer]



ADP_B_11(3OZX)
?
[Raw transfer]



ATP_A_2(5W81)
?
[Raw transfer]
2 PsiBlast_PDB 79.7629% 16 - C1 -4FIN - ETTA_ECOLI -
1 PsiBlast_PDB 76.0329% 26 - C1 -3J5S - ETTA_ECOLI -
30 HHSearch 73.6230% 46 - C1 -3J5S - ETTA_ECOLI -
39 HHSearch 69.7425% 24 - C1 -2IW3 - EF3A_YEAST -
45 HHSearch 68.6524% 23 - C1 -2IX8 - -
12 PsiBlast_PDB 63.9422% 14 - C1 -3BK7 - ? -
11 PsiBlast_PDB 63.0922% 12 - C1 -5LW7 - ? -
10 PsiBlast_PDB 62.4622% 12 - C1 -3J15 2.0 ?
51 HHSearch 62.0420% 2 - C1 -1YQT - ? -
16 PsiBlast_PDB 61.1522% 23 - C1 -1YQT - ? -
25 Fugue 60.4219% 32 - C1 -3J16 - RLI1_YEAST -
54 HHSearch 57.4323% -38 * C1 *3RLF - MALK_ECOLI -
56 HHSearch 57.1918% -53 - C1 -2AWN - MALK_ECOLI -
53 HHSearch 57.1723% -44 - C1 -2AWN - MALK_ECOLI -
3 PsiBlast_PDB 57.0024% -33 - C1 -2IWH - EF3A_YEAST -
4 PsiBlast_PDB 55.8724% -31 - C1 -2IX3 - EF3A_YEAST -
9 PsiBlast_PDB 55.7829% -38 - C1 -5X40 - CBIO_RHOCB -
5 PsiBlast_PDB 55.5125% -28 - C1 -2IW3 - EF3A_YEAST -
55 HHSearch 54.6921% -35 - C1 -3FVQ - FBPC_NEIG1 -
48 HHSearch 54.3120% 17 - C1 -3OZX 2.5 ?