@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XZE1: (2018-01-14 )
MSEEIRENIHDVNLTSEMKDSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKAHKKSARIVGDVMGKYHPHGDSAIYESMVRMAQPFSYRYMLVDGHGNFGSVDGDGAAAMRYTEARMSKIATEMLRDINKNTVDFQSNYDDTEKEPVVLPARFPNLLVNGTTGIAVGMATNIPPHNLSEVVAAIDLLMDNPDVTTNELMEVLPGPDFPTGGLVMGKSGIRRAYETGKGSITVRAKVEITEMPNGKERIIVTELPYMVNKAKLIERISELHRDKRIEGITDLRDESSREGMRIVIDIRRDASASVILNNLYKLTSLQNSFGFNMLAIEKGVPKVLSLKQILENYIEHQREVITRRTVFEKEKAEARAHILEGLRIALDHIDEIIAIIRGSKSDDEAKATMIERFDLSDRQSQAILDMRLRRLTGLEREKIENEYQELLKLIEDLTDILARPERVTEIIKNELADLNQRFGDKRRTELLVGEVLSLEDEDLIEEEEIVITLTNNGYIKRLANNEFRAQRRGGRGVQGMGIHNDDFVKNLVSCSTHDTLLFFTNNGKVYRAKGYEIPEYGRTAKGIPIINLLGIDSSESIQAIIAVTGEAEEGHYLFFTTRQGTVKRTSVTAFANIRSNGLIAIGLKEDDELVNVLLTDGQSNIIIGTHNGYSVTFKEEAVRDMGRTASGVRGIRLREEDYVVGAALMKENQEVLVITEKGYGKRTKVSEYPVKGRGGKGIKTANITEKNGPLAGLTTVSGDEDIMLITDKGVIIRFNVSTVSQTGRSTLGVRLMKMEADTKVVTMAAVEPEAAEQTVEEQGSEE

Atome Classification :

(62 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_5(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_F_7(5CDM)
GYRA_STAAN
[Raw transfer]
-
GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_A_4(3ILW)
GYRA_MYCTU
[Raw transfer]



GOL_B_8(3ILW)
GYRA_MYCTU
[Raw transfer]



NACID_H_8(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_H_8(5CDP)
GYRA_STAAN
[Raw transfer]
-
SM8_A_5(2Y3P)
GYRA_ECOLI
[Raw transfer]



SM8_B_8(2Y3P)
GYRA_ECOLI
[Raw transfer]



NACID_H_8(3RAD)
PARC_STRPN
[Raw transfer]
-
MPD_B_5(3IFZ)
GYRA_MYCTU
[Raw transfer]



TR6_H_11(4Z2E)
?
[Raw transfer]



MPD_A_3(3IFZ)
GYRA_MYCTU
[Raw transfer]



MFX_H_10(3FOF)
PARC_STRPN
[Raw transfer]



NACID_E_5(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_E_5(3KSA)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3FOF)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAE)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_G_6(5CDP)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3RAF)
PARC_STRPN
[Raw transfer]
-
NACID_F_4(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5IWM)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]
-
NACID_G_7(3KSA)
PARC_STRPN
[Raw transfer]
-
NACID_G_7(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(3RAD)
PARC_STRPN
[Raw transfer]
-
NACID_E_5(3K9F)
PARC_STRPN
[Raw transfer]
-
NACID_G_7(3LTN)
PARC_STRPN
[Raw transfer]
-
NACID_G_6(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(3KSB)
PARC_STRPN
[Raw transfer]
-
NACID_F_7(5CDR)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(5IWI)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_O_8(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_W_8(2XCR)
GYRA_STAAN
[Raw transfer]
-
NACID_P_16(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_G_5(4I3H)
?
[Raw transfer]
-
NACID_N_14(5CDN)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5IWM)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3KSB)
PARC_STRPN
[Raw transfer]
-
TR6_F_9(4Z2E)
?
[Raw transfer]



NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_E_5(3FOE)
PARC_STRPN
[Raw transfer]
-
NACID_F_6(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_N_8(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_N_8(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_F_6(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDQ)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]
-
NACID_I_6(5CDM)
GYRA_STAAN
[Raw transfer]
-
NACID_W_12(5CDO)
GYRA_STAAN
[Raw transfer]
-
103 HHSearch 83.1975% -85 - C5 -4Z2C - ? -
1 PsiBlast_PDB 83.1575% -85 - C5 -4Z2C - ? -
2 PsiBlast_PDB 82.4775% -86 - C5 -4Z2D - ? -
3 PsiBlast_PDB 82.3475% -84 - C5 -4Z2E 2.6 ?
22 PsiBlast_CBE 81.6475% -91 - C5 -4Z2C - ? -
21 PsiBlast_CBE 80.3375% -90 - C5 -4Z2E 2.6 ?
23 PsiBlast_CBE 78.7768% -90 - C5 -4DDQ - GYRA_BACSU -
4 PsiBlast_PDB 77.6968% -84 - C5 -4DDQ - GYRA_BACSU -
30 PsiBlast_CBE 76.3867% -26 - C5 -5CDR 5.1 GYRA_STAAN
6 PsiBlast_PDB 76.3267% -24 - C5 -5IWI 5.8 GYRA_STAAN (first)
8 PsiBlast_PDB 76.1767% -24 - C5 -5CDP 4.1 GYRA_STAAN
7 PsiBlast_PDB 76.0867% -24 - C5 -5IWM 4.9 GYRA_STAAN (first)
9 PsiBlast_PDB 76.0367% -26 - C5 -5CDR 4.9 GYRA_STAAN
29 PsiBlast_CBE 76.0167% -23 - C5 -5IWI 4.9 GYRA_STAAN
31 PsiBlast_CBE 75.9567% -25 - C5 -5CDP 5.4 GYRA_STAAN
102 HHSearch 75.6566% -24 * C5 *5IWI 5.8 GYRA_STAAN (first)
28 PsiBlast_CBE 75.6067% -23 - C5 -5IWM 6.6 GYRA_STAAN
12 PsiBlast_PDB 75.5667% -27 - C5 -5CDN 4.9 GYRA_STAAN (first)
41 PsiBlast_CBE 75.4067% -28 - C5 -5CDN 4.7 GYRA_STAAN (first)
11 PsiBlast_PDB 75.2667% -29 - C5 -5CDO 4.7 GYRA_STAAN
13 PsiBlast_PDB 74.9867% -26 - C5 -5CDQ 4.5 GYRA_STAAN
104 HHSearch 74.8967% -25 - C5 -5CDM 3.5 GYRA_STAAN
38 PsiBlast_CBE 74.6967% -25 - C5 -5CDQ 4.3 GYRA_STAAN
10 PsiBlast_PDB 74.6167% -25 - C5 -5CDM 3.5 GYRA_STAAN
5 PsiBlast_PDB 74.5666% -23 - C5 -2XCR 4.4 GYRA_STAAN (first)
26 PsiBlast_CBE 74.4766% -25 - C5 -2XCR 4.3 GYRA_STAAN (first)
27 PsiBlast_CBE 74.2866% -26 - C5 -2XCR 5.3 GYRA_STAAN (first)
25 PsiBlast_CBE 73.8666% -26 - C5 -2XCR 3.7 GYRA_STAAN (first)
108 HHSearch 73.7667% -26 - C5 -2XCR 5.3 GYRA_STAAN (first)
80 PsiBlast_CBE 73.3648% -81 - C5 -3RAE 4.7 PARC_STRPN
64 PsiBlast_CBE 73.2248% -83 - C5 -4I3H 5.4 ?
15 PsiBlast_PDB 73.1655% -37 - C5 -2Y3P 2.6 GYRA_ECOLI (first)
90 PsiBlast_CBE 72.8848% -77 - C5 -3K9F 5.5 PARC_STRPN
89 PsiBlast_CBE 72.8148% -77 - C5 -3K9F 5.7 PARC_STRPN
43 PsiBlast_CBE 72.7555% -36 - C5 -2Y3P 2.7 GYRA_ECOLI (first)
79 PsiBlast_CBE 72.7048% -80 - C5 -3RAE 4.1 PARC_STRPN
81 PsiBlast_CBE 72.6148% -82 - C5 -3RAD 3.5 PARC_STRPN
77 PsiBlast_CBE 72.4648% -79 - C5 -3RAF 3.6 PARC_STRPN
65 PsiBlast_CBE 72.4048% -78 - C5 -4I3H 3.8 ?
82 PsiBlast_CBE 72.0248% -76 - C5 -3RAD 4.2 PARC_STRPN
78 PsiBlast_CBE 71.7648% -76 - C5 -3RAF 3.9 PARC_STRPN
84 PsiBlast_CBE 71.7448% -78 - C5 -3LTN 5.7 PARC_STRPN
88 PsiBlast_CBE 71.7248% -86 - C5 -3KSA 5.6 PARC_STRPN
83 PsiBlast_CBE 71.7148% -78 - C5 -3LTN 5.3 PARC_STRPN
85 PsiBlast_CBE 71.5448% -89 - C5 -3KSB 5.8 PARC_STRPN
86 PsiBlast_CBE 71.4948% -88 - C5 -3KSB 4.1 PARC_STRPN
87 PsiBlast_CBE 71.4648% -86 - C5 -3KSA 6.0 PARC_STRPN
44 PsiBlast_CBE 68.0454% 7 - C5 -3IFZ 3.2 GYRA_MYCTU
106 HHSearch 68.0256% 7 - C5 -3ILW 2.7 GYRA_MYCTU
61 PsiBlast_CBE 68.0055% 10 - C5 -3ILW 2.8 GYRA_MYCTU
18 PsiBlast_PDB 67.9854% 3 - C5 -3IFZ 3.4 GYRA_MYCTU
62 PsiBlast_CBE 67.3255% 8 - C5 -3ILW 2.7 GYRA_MYCTU
91 PsiBlast_CBE 63.4848% -82 - C5 -3FOF 4.5 PARC_STRPN
92 PsiBlast_CBE 60.9448% -81 - C5 -3FOE Error PARC_STRPN
32 PsiBlast_CBE 59.2567% 14 - C5 -5CDO Error GYRA_STAAN
37 PsiBlast_CBE 59.1767% 12 - C5 -5CDQ 5.3 GYRA_STAAN
36 PsiBlast_CBE 58.3967% 15 - C5 -5CDQ Error GYRA_STAAN
39 PsiBlast_CBE 57.8867% 15 - C5 -5CDN Error GYRA_STAAN
34 PsiBlast_CBE 57.8067% 20 - C5 -5CDO 5.6 GYRA_STAAN
35 PsiBlast_CBE 57.3167% 19 - C5 -5CDM Error GYRA_STAAN
40 PsiBlast_CBE 57.1367% 14 - C5 -5CDN Error GYRA_STAAN
33 PsiBlast_CBE 56.8567% 20 - C5 -5CDO 4.9 GYRA_STAAN