@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XZE2: (2018-01-14 )
MTEERSLVERAKEYDASQIQVLEGLEAVRKRPGMYIGSTSSEGLHHLVWEIVDNSIDEVLAGFATKIHVIIEKDNSITVIDDGRGIPVDIQAKTGRPAVETVFTVLHAGGKFGGGGYKVSGGLHGVGSSVVNALSTQLDVKVYKEGNVYYQEYRRGAVVDDLKIIEQTDRHGTTVHFTPDPEIFTETTEFDFSKLATRIRELAFLNRGMRISIEDKREEEPVINEYHYDGGIKSYVEYLNANKTVIFPEPVYLEGEQQDIAVEVSMQYTDGYHSNIMSFANNIHTYEGGTHESGFKTALTRVINDYARKQKLMKENDDNLTGEDVREGLTAVISIKHPDPQFEGQTKTKLGNSEVRTVTDRLFSEHFMKFLLENPSVGRQIVEKGLLASRARLAAKRAREVTRRKGALEISNLPGKLADCSSNDPEKCELFIVEGDSAGGSAKQGRNREFQAILPIRGKILNVEKASMDKILANEEIRSLFTAMGTGFGEDFDVSKARYHKLVIMTDADVDGAHIRTLLLTLFYRYMRPIVEAGYVYIAQPPLYGVKQGKNITYVQPGKNAEEELKQVVASLPASPKPSVQRYKGLGEMDDHQLWETTMDPSNRMMARVSVDDAIAADQIFEMLMGDRVEPRRAFIEENAHYVKNLDI

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PRV)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUB)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PRX)
GYRB_ECOLI
[Raw transfer]




ANP_B_8(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_2(4XTJ)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUD)
GYRB_ECOLI
[Raw transfer]




ANP_A_2(4WUC)
GYRB_ECOLI
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




DOO_A_2(4K4O)
GYRB_ENTFA
[Raw transfer]




920_A_2(4KSG)
GYRB_ENTFA
[Raw transfer]




ANP_B_7(1EI1)
GYRB_ECOLI
[Raw transfer]




ADP_A_2(4PU9)
GYRB_ECOLI
[Raw transfer]




1A0_A_2(4HXW)
GYRB_ENTFA
[Raw transfer]




XAM_C_7(4URM)
?
[Raw transfer]




XAM_B_6(4URM)
?
[Raw transfer]




XAM_A_5(4URM)
?
[Raw transfer]




NOV_C_7(4URO)
GYRB_STAAU
[Raw transfer]




XAM_D_8(4URM)
?
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




NOV_B_6(4URO)
GYRB_STAAU
[Raw transfer]




NOV_D_8(4URO)
GYRB_STAAU
[Raw transfer]




NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]




NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]




19Y_A_3(4HXZ)
PARE_FRATH
[Raw transfer]




4S4_A_2(4ZVI)
GYRB_ECOLI
[Raw transfer]




2 PsiBlast_PDB 100.0051% 0 - C- -4I3H - ? -
1 PsiBlast_PDB 76.9851% 32 - C2 -4JUO - PARE_STRPN -
124 HHSearch 67.5348% -66 - C3 -3ZKB - GYRB_MYCTU -
28 PsiBlast_CBE 63.7246% -18 - C3 -3ZKD - GYRB_MYCTU -
31 PsiBlast_CBE 63.6246% -8 - C3 -3ZKD - GYRB_MYCTU -
26 PsiBlast_CBE 63.5246% -10 - C3 -3ZKD - GYRB_MYCTU -
125 HHSearch 63.2848% 1 - C3 -3ZKB - GYRB_MYCTU -
6 PsiBlast_PDB 62.6746% -14 - C3 -3ZKB - GYRB_MYCTU -
27 PsiBlast_CBE 62.5146% -20 - C3 -3ZKD - GYRB_MYCTU -
32 PsiBlast_CBE 62.4246% -19 - C3 -3ZKD - GYRB_MYCTU -
43 PsiBlast_CBE 62.3746% -1 - C3 -3ZKB - GYRB_MYCTU -
45 PsiBlast_CBE 62.0946% -11 - C3 -3ZKB - GYRB_MYCTU -
29 PsiBlast_CBE 61.6246% -10 - C3 -3ZKD - GYRB_MYCTU -
134 HHSearch 61.2747% -1 - C3 -1KIJ 7.6 GYRB_THET8
7 PsiBlast_PDB 60.9946% -11 - C3 -3ZKD - GYRB_MYCTU -
44 PsiBlast_CBE 60.6846% 3 - C3 -3ZKB - GYRB_MYCTU -
30 PsiBlast_CBE 60.6346% -7 - C3 -3ZKD - GYRB_MYCTU -
139 Fugue 60.3550% 20 - C3 -1EI1 8.0 GYRB_ECOLI
121 HHSearch 60.3551% 19 - C3 -1EI1 8.4 GYRB_ECOLI
140 Fugue 60.1750% 19 - C3 -1EI1 8.0 GYRB_ECOLI
47 PsiBlast_CBE 59.8346% -12 - C3 -1KIJ 7.6 GYRB_THET8
10 PsiBlast_PDB 58.9650% 17 - C3 -4WUC 10.1 GYRB_ECOLI
9 PsiBlast_PDB 58.9450% 16 - C3 -4WUB 10.0 GYRB_ECOLI
17 PsiBlast_PDB 58.6046% -14 - C3 -1KIJ 7.0 GYRB_THET8
8 PsiBlast_PDB 58.5550% 14 - C3 -4XTJ 9.7 GYRB_ECOLI
46 PsiBlast_CBE 58.2850% 18 - C3 -1EI1 8.4 GYRB_ECOLI
11 PsiBlast_PDB 58.1850% 15 - C3 -4WUD 10.1 GYRB_ECOLI
13 PsiBlast_PDB 58.0450% 12 - C3 -4PRX 7.8 GYRB_ECOLI
15 PsiBlast_PDB 58.0250% 18 - C3 -1EI1 8.0 GYRB_ECOLI
14 PsiBlast_PDB 56.7950% 10 - C3 -4PU9 7.1 GYRB_ECOLI
128 HHSearch 56.6935% -9 - C3 -1S16 10.1 PARE_ECOLI
12 PsiBlast_PDB 56.5350% 12 - C3 -4PRV 7.4 GYRB_ECOLI
137 HHSearch 55.3037% -17 - C3 -4HXZ 5.1 PARE_FRATH
20 PsiBlast_PDB 53.6585% -82 - C3 -4KSG 8.4 GYRB_ENTFA
19 PsiBlast_PDB 53.6385% -86 - C3 -4K4O 8.0 GYRB_ENTFA
18 PsiBlast_PDB 52.7285% -85 - C3 -4HXW 7.4 GYRB_ENTFA
99 PsiBlast_CBE 52.5264% -76 - C3 -4URM 10.5 ?
98 PsiBlast_CBE 52.3964% -76 - C3 -4URM 10.1 ?
92 PsiBlast_CBE 50.6764% -83 - C3 -4URO 5.3 GYRB_STAAU
97 PsiBlast_CBE 50.5064% -81 - C3 -4URM 7.9 ?
94 PsiBlast_CBE 50.3264% -75 - C3 -4URO 6.0 GYRB_STAAU
95 PsiBlast_CBE 49.7964% -80 - C3 -4URO 5.9 GYRB_STAAU
93 PsiBlast_CBE 49.7364% -75 - C3 -4URO 5.7 GYRB_STAAU
96 PsiBlast_CBE 48.8064% -71 - C3 -4URM 9.6 ?
143 Fugue 43.5148% -69 - C3 -1EI1 Error GYRB_ECOLI
144 Fugue 38.3349% 17 * C3 *1EI1 7.3 GYRB_ECOLI