@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XZM9: (2018-01-15 )
MKKALITGITGQDGSYLAEFLLEKGYEVHGITRRASISNTAHIDHLMGKITLHDGDLSDSSSLIRIISIVQPDEIYNLAAQSHVQVSFDVPEYSGDVDALGVLRILEACRILGLTKKTKVYQASTSELYGKVEEVPQRETTPFHPYSPYAVAKQYGFWITKEYREAYGMFAVNGILFNHESERRGENFVTRKITLAAGRIAEGLQDHLELGNMDSLRDWGYAKDYVECMWMILQHETPEDFVIATGEQHTVRDFTEKAFAANGITIRWEGTGIDEKGYDVETGKMLVCVNPQWFRPTDVDNLWGDPTKAKTVLGWNPQKTSYEELVSIMAKHDRELAKREAALKKASDLIE

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(1N7H)
GMD2_ARATH
[Raw transfer]



GDP_A_4(1N7H)
GMD2_ARATH
[Raw transfer]



NDP_B_5(1N7H)
GMD2_ARATH
[Raw transfer]



NDP_B_5(1N7H)
GMD2_ARATH
[Raw transfer]



NAP_A_3(5UZH)
?
[Raw transfer]



GDP_A_2(5UZH)
?
[Raw transfer]
29 PsiBlast_CBE 75.3059% -75 - C1 -1T2A - GMDS_HUMAN -
27 PsiBlast_CBE 75.2359% -77 - C1 -1T2A - GMDS_HUMAN -
5 PsiBlast_PDB 74.9859% -76 - C1 -1T2A - GMDS_HUMAN -
1 PsiBlast_PDB 74.1862% -37 - C1 -1DB3 - GM4D_ECOLI -
68 HHSearch 73.8664% -41 - C1 -1DB3 - GM4D_ECOLI -
28 PsiBlast_CBE 73.8659% -72 - C1 -1T2A - GMDS_HUMAN -
2 PsiBlast_PDB 69.6862% -1 - C1 -5UZH 9.0 ?
23 PsiBlast_CBE 69.2059% 4 - C1 -5IN5 - GMDS_HUMAN -
24 PsiBlast_CBE 69.1759% 3 - C1 -5IN4 - GMDS_HUMAN -
4 PsiBlast_PDB 68.9259% 6 - C1 -5IN5 - GMDS_HUMAN -
25 PsiBlast_CBE 68.7959% 5 - C1 -5IN4 - GMDS_HUMAN -
69 HHSearch 68.6760% 8 - C1 -5IN4 - GMDS_HUMAN -
3 PsiBlast_PDB 68.2759% 6 - C1 -5IN4 - GMDS_HUMAN -
26 PsiBlast_CBE 68.0359% 5 - C1 -5IN4 - GMDS_HUMAN -
21 PsiBlast_CBE 67.4859% 5 - C1 -5IN5 - GMDS_HUMAN -
22 PsiBlast_CBE 67.4359% 5 - C1 -5IN5 - GMDS_HUMAN -
71 HHSearch 66.6263% 8 - C1 -5UZH 11.9 ?
30 PsiBlast_CBE 65.7755% 17 - C1 -2Z95 - ? -
73 HHSearch 65.7457% 14 - C1 -2Z1M - ? -
7 PsiBlast_PDB 65.5755% 16 - C1 -2Z95 - ? -
9 PsiBlast_PDB 65.3354% -4 - C1 -1N7H 12.2 GMD2_ARATH
75 HHSearch 64.0459% 9 - C1 -1N7H 12.0 GMD2_ARATH
32 PsiBlast_CBE 63.6554% 12 - C1 -1N7H 12.0 GMD2_ARATH