@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y056: (2018-01-18 )
MGFFDKIKRAFTGEEKTEEVEVQEKYDKGLEKTRKTFGERMNELFANFRTVDEDFFEELEETLIGADVGFETAIRITEALRQEVKLRNAKKSAEVQNAIIEKLVDLYEAEGINEVNELNIQEDGLTVILFVGVNGVGKTTSIGKLAHQFKNEGKKVLMAAADTFRAGAIDQLVVWGERAGVEVVRGNAGGDPAAVVFDALERAKTEQADVLLVDTAGRLQNKVNLMNELEKIKRVIQRELPEAPQETLLVLDATTGQNAMVQAKQFKETTDVTGLVLTKLDGTAKGGIVLAIRNELHLPVKLVGLGEGIDDLEPFDPNDFVVGLFKGLLKEE

Atome Classification :

(62 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_6(2J7P)
FTSY_THEAQ
[Raw transfer]




GCP_B_7(5L3R)
CFTSY_ARATH
[Raw transfer]




GCP_D_13(5L3R)
CFTSY_ARATH
[Raw transfer]




GCP_B_7(5L3R)
CFTSY_ARATH
[Raw transfer]




GDP_A_6(1O87)
SRP54_THEAQ
[Raw transfer]




GCP_B_6(1RJ9)
SRP54_THEAQ
[Raw transfer]




GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_B_11(4C7O)
FTSY_ECOLI
[Raw transfer]




GCP_D_17(1OKK)
FTSY_THEAQ
[Raw transfer]




GDP_B_6(5L3V)
SRP54_SULSO
[Raw transfer]




GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_A_16(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_A_3(5L3V)
SRP54_SULSO
[Raw transfer]




GDP_A_16(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_A_2(5L3W)
FTSY_SULAC
[Raw transfer]




GDP_A_2(5L3W)
FTSY_SULAC
[Raw transfer]




GNP_B_20(2J7P)
SRP54_THEAQ
[Raw transfer]




GNP_A_12(2J7P)
SRP54_THEAQ
[Raw transfer]




GNP_K_11(2Q9C)
FTSY_THEAQ
[Raw transfer]




CIT_B_4(1VMA)
?
[Raw transfer]




GNP_B_2(1JPJ)
SRP54_THEAQ
[Raw transfer]




GNP_B_5(1JPN)
SRP54_THEAQ
[Raw transfer]




CIT_B_4(1VMA)
?
[Raw transfer]




GNP_A_6(1JPN)
SRP54_THEAQ
[Raw transfer]




GCP_B_7(5L3R)
SR54C_ARATH
[Raw transfer]




GCP_D_13(5L3R)
SR54C_ARATH
[Raw transfer]




GNP_B_14(5L3Q)
SRP54_HUMAN
[Raw transfer]




GCP_D_13(5L3R)
SR54C_ARATH
[Raw transfer]




GDP_B_2(2NG1)
SRP54_THEAQ
[Raw transfer]




GNP_T_20(2Q9B)
FTSY_THEAQ
[Raw transfer]




GDP_B_12(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_C_14(4C7O)
FTSY_ECOLI
[Raw transfer]




GNP_B_20(2J7P)
FTSY_THEAQ
[Raw transfer]




GCP_A_3(1OKK)
FTSY_THEAQ
[Raw transfer]




GDP_D_2(2IYL)
FTSY_THEAQ
[Raw transfer]




GDP_A_7(1NG1)
SRP54_THEAQ
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




GOL_C_16(3DMD)
?
[Raw transfer]




GOL_B_14(3DMD)
?
[Raw transfer]




GOL_B_14(3DMD)
?
[Raw transfer]




GOL_A_15(3DMD)
?
[Raw transfer]




GDP_A_8(4C7O)
FTSY_ECOLI
[Raw transfer]




GNP_A_12(2J7P)
FTSY_THEAQ
[Raw transfer]




FMT_A_5(1O87)
SRP54_THEAQ
[Raw transfer]




GNP_D_25(5L3Q)
SRP54_HUMAN
[Raw transfer]




GCP_D_17(1OKK)
SRP54_THEAQ
[Raw transfer]




GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_D_17(4C7O)
SRP54_ECOLI
[Raw transfer]




FMT_B_11(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_D_17(4C7O)
SRP54_ECOLI
[Raw transfer]




EDO_B_13(3NG1)
SRP54_THEAQ
[Raw transfer]




EDO_A_11(3NG1)
SRP54_THEAQ
[Raw transfer]




OXY_A_3(1LS1)
SRP54_THEAQ
[Raw transfer]




EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]




GDP_D_18(4C7O)
FTSY_ECOLI
[Raw transfer]




ACY_B_7(1JPN)
SRP54_THEAQ
[Raw transfer]




AMP_C_22(5L3Q)
SRP54_HUMAN
[Raw transfer]




AMP_A_9(5L3Q)
SRP54_HUMAN
[Raw transfer]




ACY_A_9(1JPN)
SRP54_THEAQ
[Raw transfer]




97 HHSearch 84.1752%-116 - C6 -1VMA 3.8 ?
3 PsiBlast_PDB 82.3451%-112 - C6 -1VMA - ? -
21 PsiBlast_CBE 82.1951%-114 - C6 -1VMA 3.8 ?
94 HHSearch 81.1144%-117 - C6 -2YHS 2.5 FTSY_ECOLI
104 HHSearch 79.5447%-123 - C6 -3ZN8 - FTSY_ECOLI -
105 HHSearch 75.4843% -39 - C6 -1ZU4 - FTSY_MYCMS -
107 HHSearch 74.2544% -38 - C6 -1ZU5 - FTSY_MYCMS -
7 PsiBlast_PDB 73.8744% -26 - C6 -2YHS - FTSY_ECOLI -
14 PsiBlast_PDB 73.4047%-117 - C6 -1OKK 9.1 FTSY_THEAQ
5 PsiBlast_PDB 72.6646% -24 - C6 -2QY9 - FTSY_ECOLI -
8 PsiBlast_PDB 72.5846% -28 - C6 -1FTS - FTSY_ECOLI -
30 PsiBlast_CBE 72.4347%-112 - C6 -2J7P 2.7 FTSY_THEAQ
28 PsiBlast_CBE 72.3347%-113 - C6 -2CNW - FTSY_THEAQ -
9 PsiBlast_PDB 72.2446% -30 - C6 -3ZN8 - FTSY_ECOLI -
31 PsiBlast_CBE 72.0247%-115 - C6 -2J7P 2.7 FTSY_THEAQ
23 PsiBlast_CBE 71.6645% -50 - C6 -5L3R 8.8 CFTSY_ARATH
12 PsiBlast_PDB 71.4045% -53 - C6 -5L3R 8.4 CFTSY_ARATH
95 HHSearch 71.1444% -49 - C6 -3B9Q - CFTSY_ARATH -
15 PsiBlast_PDB 70.7547%-124 - C6 -2XKV - FTSY_THEAQ -
27 PsiBlast_CBE 70.3447%-111 - C6 -2Q9A - FTSY_THEAQ -
96 HHSearch 70.0346% -50 - C6 -5L3R 8.4 CFTSY_ARATH
111 HHSearch 69.6837%-115 - C6 -5L3R 2.9 SR54C_ARATH
24 PsiBlast_CBE 69.5447% -19 - C6 -4C7O 3.3 FTSY_ECOLI
79 PsiBlast_CBE 68.7032%-118 * C6 *5L3Q 3.7 SRP54_HUMAN
80 PsiBlast_CBE 67.5832%-116 - C6 -5L3Q 3.7 SRP54_HUMAN
13 PsiBlast_PDB 67.3147% -18 - C6 -4C7O 7.0 FTSY_ECOLI
32 PsiBlast_CBE 60.3247% 56 - C6 -1RJ9 2.5 FTSY_THEAQ
100 HHSearch 60.2437% 31 - C6 -4C7O 3.0 SRP54_ECOLI
18 PsiBlast_PDB 59.8647% 50 - C6 -2Q9C 6.4 FTSY_THEAQ
41 PsiBlast_CBE 59.5135% 17 - C6 -5L3W 6.8 FTSY_SULAC
20 PsiBlast_PDB 59.3547% 63 - C6 -2IYL 7.2 FTSY_THEAQ
43 PsiBlast_CBE 58.8537% -5 - C6 -5L3R 2.9 SR54C_ARATH
17 PsiBlast_PDB 58.7547% 52 - C6 -2Q9B 5.9 FTSY_THEAQ
42 PsiBlast_CBE 58.4737% -8 - C6 -5L3R 2.9 SR54C_ARATH
99 HHSearch 58.3640% -19 - C6 -3E70 7.1 ?
106 HHSearch 58.0036% 32 - C6 -5L3W 6.9 FTSY_SULAC
98 HHSearch 57.1240% 1 - C6 -3DMD 3.4 ?
113 HHSearch 55.9035% 14 - C6 -3DM5 7.5 SRP54_PYRFU
114 HHSearch 55.7535% 17 - C6 -3DM5 7.0 SRP54_PYRFU
33 PsiBlast_CBE 55.5440% 10 - C6 -3E70 7.1 ?
35 PsiBlast_CBE 55.4240% 7 - C6 -3DMD 3.4 ?
34 PsiBlast_CBE 55.3140% 4 - C6 -3DMD 2.3 ?
87 PsiBlast_CBE 55.2331% 16 - C6 -5L3V 8.6 SRP54_SULSO
74 PsiBlast_CBE 55.0834% 32 - C6 -3DM5 7.5 SRP54_PYRFU
36 PsiBlast_CBE 54.9440% 8 - C6 -3DMD 2.3 ?
73 PsiBlast_CBE 54.6734% 40 - C6 -3DM5 7.0 SRP54_PYRFU
50 PsiBlast_CBE 54.6038% 56 - C6 -3NG1 3.5 SRP54_THEAQ
48 PsiBlast_CBE 54.5738% 55 - C6 -1JPJ 7.6 SRP54_THEAQ
88 PsiBlast_CBE 54.4631% 20 - C6 -5L3V 7.5 SRP54_SULSO
64 PsiBlast_CBE 54.3238% 62 - C6 -1O87 7.0 SRP54_THEAQ
52 PsiBlast_CBE 54.3138% 57 - C6 -2J7P 9.3 SRP54_THEAQ
49 PsiBlast_CBE 54.2938% 56 - C6 -3NG1 3.5 SRP54_THEAQ
57 PsiBlast_CBE 54.2738% 60 - C6 -1NG1 7.5 SRP54_THEAQ
51 PsiBlast_CBE 54.0838% 60 - C6 -2J7P 9.3 SRP54_THEAQ
56 PsiBlast_CBE 54.0638% 62 - C6 -1OKK 3.1 SRP54_THEAQ
65 PsiBlast_CBE 53.2538% 62 - C6 -1O87 7.1 SRP54_THEAQ
70 PsiBlast_CBE 53.1438% 65 - C6 -2NG1 6.3 SRP54_THEAQ
75 PsiBlast_CBE 52.8843% -14 - C6 -4C7O 3.0 SRP54_ECOLI
46 PsiBlast_CBE 52.7838% 63 - C6 -1JPN 6.5 SRP54_THEAQ
69 PsiBlast_CBE 51.9838% 64 - C6 -1RJ9 9.4 SRP54_THEAQ
47 PsiBlast_CBE 51.8138% 64 - C6 -1JPN 7.4 SRP54_THEAQ
76 PsiBlast_CBE 51.7143% -11 - C6 -4C7O 3.2 SRP54_ECOLI