@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y0E2: (2018-01-20 )
MNIALVGNPNSGKTSLFNLLTGSNQYVGNWPGVTVEKKEGSLKKNPNIHIQDLPGIYSLSPYTPEEVIARDYLVQEQPELIINIIDATNLERNLYLTTQLLDLDIPMIIGLNMMDVIKKEGKKINLEKLSYGLGVPVLPISVLKKQGIEKLIEKIQESAKKRPSIPVPCTYDPRLEAALHEIEDVLGEQSGKKRWYAMKYFERDQKVREDYEIAVSQQKEIEQLIQLTEKLLDDDSETILVNERYEFITQLCTLCVVSNDSFQLSMSDKIDQIATNRWLALPIFAFVMWLIYYLAIQTVGTMGTDWINDTLFGTWLPEHVGRLLAEWQVAGWMQELILNGIIAGVGAVLGFLPQLIILFLCLSFLEDCGYMARIAFVMDRLFRKFGLSGKSFIPMLIATGCGVPGVMASRTIENEQDRRLTIMVTTFMPCSAKLPIIALVAGAFFPHQSWVAPSAYFLGMTAIIFSGISLKKTRLFAGDTAPFIMELPAYHFPQWSAVLRQTYDRSKSFVKKAGTIIFVSSIVIWFSSSYNFYAQPVSEDQSILAFFGRILAVVFQPLGWGNWQGTVAAITGLVAKENIIGTFGILFGHAEVSENGREIWQVLQHTYTPAAAYSLLAFNLLCAPCFAAIGAIHREMNAKKWTWIAIGYQCGLAYLVSFVIYQLGHLLEGGQVALGTYLAILLMIGLVYVLFRQPKSKNQFYTILSLEGEE

Atome Classification :

(41 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_B_7(3A1U)
?
[Raw transfer]




GNP_A_3(3A1U)
?
[Raw transfer]




GDP_A_3(3SS8)
?
[Raw transfer]




GGM_A_2(3B1V)
?
[Raw transfer]




GNP_B_5(3B1X)
?
[Raw transfer]




GDP_B_7(3SS8)
?
[Raw transfer]




AGO_A_2(3LX5)
?
[Raw transfer]




GGM_A_2(3B1V)
?
[Raw transfer]




GNP_A_3(3B1X)
?
[Raw transfer]




GNH_A_2(3B1Y)
?
[Raw transfer]




GNP_B_5(2WJI)
FEOB_METJA
[Raw transfer]




GNP_B_5(2WJI)
FEOB_METJA
[Raw transfer]




GDP_B_6(3B1W)
?
[Raw transfer]




AGO_C_8(3HYT)
FEOB_ECOLI
[Raw transfer]




BGO_A_3(3TAH)
?
[Raw transfer]




BGO_B_6(3TAH)
?
[Raw transfer]




GDP_A_3(4NON)
?
[Raw transfer]




GDP_A_2(3LX8)
?
[Raw transfer]




GDP_A_3(4NON)
?
[Raw transfer]




GNP_A_2(2WIC)
?
[Raw transfer]




GDP_A_3(2WJH)
FEOB_METJA
[Raw transfer]




GDP_A_3(2WJH)
FEOB_METJA
[Raw transfer]




GDP_D_8(3B1W)
?
[Raw transfer]




GDP_C_7(3B1W)
?
[Raw transfer]




GNP_A_3(2WJI)
FEOB_METJA
[Raw transfer]




GDP_A_3(2WIB)
?
[Raw transfer]




GDP_B_4(2WIB)
?
[Raw transfer]




GCP_B_7(3I92)
FEOB_ECOLI
[Raw transfer]




GDP_B_5(2WJG)
FEOB_METJA
[Raw transfer]




GDP_B_4(4NON)
?
[Raw transfer]




GDP_A_5(3B1W)
?
[Raw transfer]




GDP_A_3(2WJJ)
FEOB_METJA
[Raw transfer]




AGO_B_6(3HYT)
FEOB_ECOLI
[Raw transfer]




GDP_A_4(2WJG)
FEOB_METJA
[Raw transfer]




GDP_C_6(3I8X)
FEOB_ECOLI
[Raw transfer]




GCP_A_5(3I92)
FEOB_ECOLI
[Raw transfer]




GCP_C_9(3I92)
FEOB_ECOLI
[Raw transfer]




GNH_A_3(4R98)
FEOB_ECOLI
[Raw transfer]




GDP_A_3(3A1S)
?
[Raw transfer]




2 PsiBlast_PDB 94.0652% -69 - C6 -3LX8 7.4 ?
5 PsiBlast_PDB 93.6151% -67 - C6 -3B1Y 8.2 ?
9 PsiBlast_PDB 93.4651% -62 - C6 -3TAH 6.5 ?
26 PsiBlast_CBE 93.4351% -60 - C6 -3TAH 7.1 ?
25 PsiBlast_CBE 92.5851% -64 - C6 -3B1W 6.9 ?
27 PsiBlast_CBE 92.5153% -67 - C6 -4NON 6.8 ?
3 PsiBlast_PDB 92.4252% -67 - C6 -3SS8 8.2 ?
10 PsiBlast_PDB 92.3053% -60 - C6 -4NON 6.9 ?
24 PsiBlast_CBE 92.2051% -67 - C6 -3B1W 6.6 ?
21 PsiBlast_CBE 91.8952% -60 - C6 -3SS8 7.9 ?
7 PsiBlast_PDB 91.6951% -65 - C6 -3B1W 6.7 ?
101 HHSearch 91.4053% -55 - C6 -4NON 6.9 ?
23 PsiBlast_CBE 91.3351% -63 - C6 -3B1W 6.8 ?
106 HHSearch 91.2552% -62 - C6 -3B1V 11.6 ?
8 PsiBlast_PDB 90.8751% -65 - C6 -3B1X 10.1 ?
6 PsiBlast_PDB 90.6351% -62 - C6 -3B1V 11.6 ?
4 PsiBlast_PDB 90.6251% -65 - C6 -3B1Z - ? -
22 PsiBlast_CBE 90.3051% -61 - C6 -3B1X 10.2 ?
1 PsiBlast_PDB 89.4252% -62 - C6 -3LX5 10.9 ?
14 PsiBlast_PDB 77.7339% 2 - C6 -3K53 - ? -
107 HHSearch 74.5835% -19 - C6 -3A1S 2.4 ?
17 PsiBlast_PDB 72.2641% -21 - C6 -3A1U Error ?
43 PsiBlast_CBE 70.5537% 7 - C6 -4R98 4.5 FEOB_ECOLI
32 PsiBlast_CBE 70.4741% -23 - C6 -3A1U Error ?
110 HHSearch 67.6953% -21 - C6 -2WJH 5.7 FEOB_METJA
35 PsiBlast_CBE 67.5239% 27 - C6 -3I92 6.5 FEOB_ECOLI
34 PsiBlast_CBE 67.2139% 24 - C6 -3I92 6.2 FEOB_ECOLI
13 PsiBlast_PDB 67.0052% -24 - C6 -2WJH 5.7 FEOB_METJA
15 PsiBlast_PDB 66.8351% -19 - C6 -2WJJ 6.1 FEOB_METJA
39 PsiBlast_CBE 66.3339% -11 - C6 -3HYT 7.4 FEOB_ECOLI
11 PsiBlast_PDB 65.6250% -14 - C6 -2WJG 5.5 FEOB_METJA
40 PsiBlast_CBE 65.4139% -3 - C6 -3HYT 4.9 FEOB_ECOLI
33 PsiBlast_CBE 64.9839% 30 - C6 -3I92 5.6 FEOB_ECOLI
36 PsiBlast_CBE 64.5439% 32 - C6 -3I8X 6.2 FEOB_ECOLI
44 PsiBlast_CBE 64.4036% -18 - C6 -2WIC 8.0 ?
28 PsiBlast_CBE 64.3550% -20 - C6 -2WJG 4.8 FEOB_METJA
109 HHSearch 64.3053% -16 * C6 *2WJI 7.7 FEOB_METJA
46 PsiBlast_CBE 64.2536% 8 - C6 -2WIB 6.2 ?
45 PsiBlast_CBE 63.6136% -6 - C6 -2WIB 5.6 ?
29 PsiBlast_CBE 63.4552% -17 - C6 -2WJI 7.7 FEOB_METJA
12 PsiBlast_PDB 62.5552% -20 - C6 -2WJI 7.3 FEOB_METJA