@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y0E9: (2018-01-20 )
MEIIRVKNAEEGGKKAFEIIKEGMNKGAKVLGLATGSTPVTLYKEMTSSDLDFSEMTSVNLDEYVGLGGSDEQSYRHFMDVQLFDKKPFKETFVPDGKAEDLEAACKKYDQIIDAHPIDIQILGIGQNGHIGFNEPGASFDGTTSVVDLTESTINANKRFFDKAEDVPTKAVSMGIGSIMKSKEIVLMAFGESKADAIKGMIEGPVTNHLPASVLQNHDNVVVIIDEEAASKL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGP_B_16(1HOR)
NAGB_ECOLI
[Raw transfer]



AGP_A_13(1HOR)
NAGB_ECOLI
[Raw transfer]



GLP_B_4(2RI1)
NAGB_STRMU
[Raw transfer]



F6R_B_4(2BKX)
NAGB_BACSU
[Raw transfer]



GLP_B_4(2RI1)
NAGB_STRMU
[Raw transfer]



F6R_B_4(2BKX)
NAGB_BACSU
[Raw transfer]



F6R_A_3(2BKX)
NAGB_BACSU
[Raw transfer]



GLP_A_3(2RI1)
NAGB_STRMU
[Raw transfer]



FPC_A_10(1FQO)
NAGB_ECOLI
[Raw transfer]



FGS_B_6(2WU1)
NAGB_ECOLI
[Raw transfer]



FGS_A_4(2WU1)
NAGB_ECOLI
[Raw transfer]



TLA_A_5(1FS5)
NAGB_ECOLI
[Raw transfer]



PGA_A_3(2BKV)
NAGB_BACSU
[Raw transfer]



PGA_B_4(2BKV)
NAGB_BACSU
[Raw transfer]



PGA_B_4(2BKV)
NAGB_BACSU
[Raw transfer]
1 PsiBlast_PDB 98.2858%-106 - C3 -2RI0 - NAGB_STRMU -
21 PsiBlast_CBE 97.1858%-105 - C3 -2RI0 - NAGB_STRMU -
2 PsiBlast_PDB 96.8058%-106 - C3 -2RI1 3.7 NAGB_STRMU
22 PsiBlast_CBE 96.6658%-100 - C3 -2RI1 3.6 NAGB_STRMU
73 HHSearch 89.4258% -46 - C3 -2RI1 3.6 NAGB_STRMU
67 HHSearch 74.1545% 30 - C3 -2BKX 4.4 NAGB_BACSU
68 HHSearch 72.5045% 30 - C3 -2BKV 3.2 NAGB_BACSU
23 PsiBlast_CBE 72.3445% 45 - C3 -2BKX 4.4 NAGB_BACSU
10 PsiBlast_PDB 72.2533% 35 - C3 -1CD5 - NAGB_ECOLI -
14 PsiBlast_PDB 71.8633% 36 - C3 -1FS6 - NAGB_ECOLI -
3 PsiBlast_PDB 71.8245% 44 - C3 -2BKV 2.5 NAGB_BACSU
4 PsiBlast_PDB 71.5045% 45 - C3 -2BKX 4.3 NAGB_BACSU
30 PsiBlast_CBE 71.2033% 37 - C3 -2WU1 2.7 NAGB_ECOLI
24 PsiBlast_CBE 71.1645% 45 - C3 -2BKV 3.2 NAGB_BACSU
15 PsiBlast_PDB 70.9233% - - C3 -1FSF - NAGB_ECOLI -
12 PsiBlast_PDB 70.7933% 37 - C3 -1FRZ - NAGB_ECOLI -
39 PsiBlast_CBE 70.6836% 40 - C3 -1NE7 - GNPI1_HUMAN -
31 PsiBlast_CBE 70.6733% 38 - C3 -1HOT - NAGB_ECOLI -
40 PsiBlast_CBE 70.6036% 38 - C3 -1NE7 - GNPI1_HUMAN -
35 PsiBlast_CBE 70.5433% 37 - C3 -1FQO - NAGB_ECOLI -
13 PsiBlast_PDB 70.4833% 37 - C3 -1FS5 2.5 NAGB_ECOLI
32 PsiBlast_CBE 69.7133% 38 - C3 -1HOR 5.1 NAGB_ECOLI
7 PsiBlast_PDB 69.1733% 40 - C3 -1HOR 4.8 NAGB_ECOLI