@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y0P7: (2018-01-21 )
MKIVIVGGVAGGMSAATRLRRLMEDAEIVVFEKGPYVSFANCGLPYYLSGEISERENLLVQTPESLSARFCLDVRPNHEVTAIFPENKTVEVVHEGQKHIEQYDALVLSPGAKPVVPSIPGITEADNVFSIRNVPDIDKVMHALEKQPKRAVIVGAGFIGLEMAENLKRRGLEVMVIEQAPHILPTLDEEMAAFIEKELSHQGVEVITSHAVAGFEDHGKRLRLDDGRTIPADLVILSIGVRPDNQLAVTAGIELGIRGGILVDERYQTNIPDIYAVGDAIVVKQQITGKDALISLASPANRQGRQVADTISGISRRNQGGIGTAIIRTFGMTAASTGLSERTAKENELSFEVIHVSGKDHASYYPEATDILLKLIFHPETGEIYGAQGVGAKGVDKRIDILATAIKGHLTIFDLPELELTYAPPFGSAKDPVNMLGYAAMNIAEGLSETVQWHELPTELAKGKILLDVRTAEELEKGKFKEAKHIPLNELRDRLNELDSQQEYIVSCHSGLRSYLAERILKQSGYHVKNLDGAFSLYQTVRPEELIYPNK

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_7(3NTD)
?
[Raw transfer]



FAD_A_4(3NTA)
?
[Raw transfer]



FAD_A_5(3NTD)
?
[Raw transfer]



FAD_A_4(3NT6)
?
[Raw transfer]



FAD_A_5(3NTD)
?
[Raw transfer]



FAD_B_5(4OCG)
?
[Raw transfer]



FAD_A_3(4OCG)
?
[Raw transfer]



FAD_B_6(3ICS)
?
[Raw transfer]



FAD_A_3(3ICT)
?
[Raw transfer]



FAD_A_3(3ICR)
?
[Raw transfer]



FAD_A_3(3ICT)
?
[Raw transfer]



COA_A_4(3ICT)
?
[Raw transfer]



COA_B_7(3ICS)
?
[Raw transfer]



FMT_A_9(4H4Z)
?
[Raw transfer]



FMT_A_8(4H4R)
?
[Raw transfer]



FMT_A_9(4H4P)
?
[Raw transfer]



FMT_A_4(4H4T)
?
[Raw transfer]



FMT_A_9(4H4X)
?
[Raw transfer]
93 HHSearch 85.7451% -3 - C1 -3ICT 12.2 ?
92 HHSearch 84.7851% -2 - C1 -3ICS 12.4 ?
91 HHSearch 79.8345% -6 - C1 -3NTD 13.3 ?
3 PsiBlast_PDB 78.7349% 11 - C1 -3ICT 10.4 ?
2 PsiBlast_PDB 78.4349% 10 - C1 -3ICS - ? -
6 PsiBlast_PDB 78.4043% -16 - C1 -3NTA 12.0 ?
1 PsiBlast_PDB 77.7949% 13 - C1 -3ICR 10.9 ?
22 PsiBlast_CBE 77.2043% -16 - C1 -3NTD 13.0 ?
5 PsiBlast_PDB 76.7043% -16 - C1 -3NTD 13.3 ?
7 PsiBlast_PDB 76.5743% -16 - C1 -3NT6 13.4 ?
21 PsiBlast_CBE 76.5443% -15 - C1 -4OCG 12.7 ?
4 PsiBlast_PDB 76.0543% -14 - C1 -4OCG 11.9 ?
95 HHSearch 66.4630% -22 - C1 -5ER0 - ? -
103 HHSearch 62.5935% -2 - C1 -3CGB - ? -
101 HHSearch 62.5735% -13 - C1 -3IWA - ? -
104 HHSearch 62.1135% -3 - C1 -3CGE - ? -
12 PsiBlast_PDB 61.9335% -9 - C1 -3IWA - ? -
96 HHSearch 61.5434% -10 - C1 -4EQS - CDR_STAA3 -
23 PsiBlast_CBE 61.3835% -6 - C1 -3CGE - ? -
24 PsiBlast_CBE 60.8635% -6 - C1 -3CGD - ? -
61 PsiBlast_CBE 49.0434% -56 - C1 -4H4R 3.1 ?
40 PsiBlast_CBE 48.6834% -45 - C1 -4H4T 3.1 ?
57 PsiBlast_CBE 48.6534% -49 - C1 -4H4P 3.2 ?
53 PsiBlast_CBE 48.0034% -51 - C1 -4H4Z 3.1 ?
55 PsiBlast_CBE 47.7734% -51 - C1 -4H4X 3.2 ?