@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y184: (2018-01-24 )
MTAAAEKKDHQKVILVGDGAVGSSYAFALVTQNIAQEVGIVDINTAKTEGDAIDLSHALAFTSPKKIYSATYADAHDADLVVITAGAPQKPGETRLDLVNKNLKINRDVVTQIVESGFNGIFLVAANPVDILTYSTWKFSGFPKERVIGSGTSLDSARFRQALAELVDVDARNVHAYILGEHGDSEFPVWSHANVAGLQIYEWVKNNPEIDEEAMVNLFFGVRDAAYTIIEKKGATFYGIAVALARITRAILDDENAVLPLSVFMNGEYGLNDIYIGAPAVINRQGIQKVIEIPLSDSEQDRMAASAKQLKEILDEAFAKLDAE

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_F_6(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_H_8(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_H_8(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_G_7(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_E_5(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_R_18(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_Q_17(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_A_3(3H3J)
LDH1_STAAC
[Raw transfer]



NAD_O_15(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_P_16(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_B_7(2XXJ)
LDH_THET8
[Raw transfer]



NAD_B_6(3H3J)
LDH1_STAAC
[Raw transfer]



NAD_B_11(3VPH)
LDH_THECA
[Raw transfer]



NAD_B_5(3D4P)
LDH1_STAAC
[Raw transfer]



NAD_A_3(3D4P)
LDH1_STAAC
[Raw transfer]



NAD_C_5(3PQF)
LDH_BACSU
[Raw transfer]



NAD_D_6(3PQF)
LDH_BACSU
[Raw transfer]



NAD_B_8(2V7P)
LDH_THET8
[Raw transfer]



OXM_D_9(2XXJ)
LDH_THET8
[Raw transfer]



OXM_C_13(3VPH)
LDH_THECA
[Raw transfer]



OXM_A_5(2V7P)
LDH_THET8
[Raw transfer]



OXM_A_5(3VPH)
LDH_THECA
[Raw transfer]



OXM_C_9(2V7P)
LDH_THET8
[Raw transfer]



OXM_D_11(2V7P)
LDH_THET8
[Raw transfer]



OXM_D_15(3VPH)
LDH_THECA
[Raw transfer]



MPD_A_6(4M1Q)
?
[Raw transfer]



OXM_A_7(1A5Z)
LDH_THEMA
[Raw transfer]
36 PsiBlast_CBE 94.5473%-129 - C7 -3VPF - LDH_LACCA -
37 PsiBlast_CBE 94.2273%-128 - C7 -3VPF - LDH_LACCA -
22 PsiBlast_CBE 94.1974%-135 - C7 -3VKV - LDH_LACCA -
25 PsiBlast_CBE 93.8174%-139 - C7 -3VKV - LDH_LACCA -
21 PsiBlast_CBE 93.1774%-136 - C7 -3VKV - LDH_LACCA -
23 PsiBlast_CBE 92.8274%-139 - C7 -3VKV - LDH_LACCA -
2 PsiBlast_PDB 91.9774%-137 - C7 -2ZQZ - LDH_LACCA -
3 PsiBlast_PDB 91.8674%-142 - C7 -3VKV - LDH_LACCA -
1 PsiBlast_PDB 91.6274%-139 - C7 -2ZQY - LDH_LACCA -
6 PsiBlast_PDB 91.5273%-137 - C7 -3VPF - LDH_LACCA -
133 HHSearch 91.0473%-139 - C7 -3VKU - LDH_LACCA -
5 PsiBlast_PDB 89.5973%-140 - C7 -3VKU - LDH_LACCA -
24 PsiBlast_CBE 89.3174%-138 - C7 -3VKV - LDH_LACCA -
44 PsiBlast_CBE 88.2861%-122 - C7 -1EZ4 8.1 LDH_LACPE
46 PsiBlast_CBE 87.9861%-122 - C7 -1EZ4 8.9 LDH_LACPE
7 PsiBlast_PDB 85.8261%-132 - C7 -1EZ4 8.8 LDH_LACPE
4 PsiBlast_PDB 85.4173%-117 - C7 -1LLC - LDH_LACCA -
45 PsiBlast_CBE 85.4061%-128 - C7 -1EZ4 8.4 LDH_LACPE
19 PsiBlast_PDB 83.6251%-100 - C7 -4M1Q 3.7 ?
15 PsiBlast_PDB 81.7355% -54 - C7 -3PQF - LDH_BACSU -
77 PsiBlast_CBE 81.0740%-150 - C7 -1A5Z 2.8 LDH_THEMA
132 HHSearch 79.9461% -37 - C7 -1EZ4 8.1 LDH_LACPE
56 PsiBlast_CBE 77.9855% -57 - C7 -3PQF 7.0 LDH_BACSU
57 PsiBlast_CBE 77.1555% -58 - C7 -3PQF 7.9 LDH_BACSU
8 PsiBlast_PDB 76.9258% -48 - C7 -3H3J 8.2 LDH1_STAAC
47 PsiBlast_CBE 76.6158% -47 - C7 -3H3J 8.7 LDH1_STAAC
48 PsiBlast_CBE 76.5458% -55 - C7 -3D4P 7.9 LDH1_STAAC
10 PsiBlast_PDB 76.4858% -56 - C7 -3D4P 6.2 LDH1_STAAC
87 PsiBlast_CBE 76.0741% -96 - C7 -2XXJ 3.6 LDH_THET8
89 PsiBlast_CBE 75.9041% -96 - C7 -2XXJ 11.3 LDH_THET8
79 PsiBlast_CBE 74.9842% -95 - C7 -2V7P 3.2 LDH_THET8
93 PsiBlast_CBE 74.4641%-100 - C7 -3VPH 2.2 LDH_THECA
96 PsiBlast_CBE 74.1441% -99 - C7 -3VPH 2.6 LDH_THECA
81 PsiBlast_CBE 74.0442% -96 - C7 -2V7P 2.8 LDH_THET8
59 PsiBlast_CBE 73.7056% -86 - C7 -2LDB 7.3 LDH_GEOSE
60 PsiBlast_CBE 73.6856% -86 - C7 -2LDB 7.8 LDH_GEOSE
17 PsiBlast_PDB 73.6356% -86 - C7 -2LDB 7.6 LDH_GEOSE
58 PsiBlast_CBE 73.5956% -86 - C7 -2LDB 7.4 LDH_GEOSE
94 PsiBlast_CBE 73.4541% -99 - C7 -3VPH 2.3 LDH_THECA
80 PsiBlast_CBE 72.9842%-106 - C7 -2V7P 9.5 LDH_THET8
95 PsiBlast_CBE 72.6141% -99 - C7 -3VPH 9.4 LDH_THECA
78 PsiBlast_CBE 71.7842%-103 - C7 -2V7P 2.9 LDH_THET8