@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y1A2: (2018-01-24 )
MSERGLLIVLSGPSGVGKGTVRKAIFESEDNDFQYSISMTTRKMREGEVEGVDYFFRSKEEFESMIEAGEMLEYAEYVGNYYGTPLSYVNKTLDEGKDVFLEIEVQGAKQVKEKVPDGVFIFLTPPDLAELKSRIVGRGTDADEVIEERMKVAKEEIEMMALYDYAVVNDEVPLAVERIKNIIASEHFRVDRVIGKYIKMLKEM

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0O2_C_12(4QRH)
?
[Raw transfer]




0O2_B_8(4QRH)
?
[Raw transfer]




G5P_G_7(2F3R)
KGUA_ECOLI
[Raw transfer]




0O2_B_8(4QRH)
?
[Raw transfer]




G5P_J_10(2F3R)
KGUA_ECOLI
[Raw transfer]




0O2_C_12(4QRH)
?
[Raw transfer]




GDP_S_19(2AN9)
KGUA_ECOLI
[Raw transfer]




5GP_D_15(2J41)
KGUA_STAAC
[Raw transfer]




0O2_D_18(4QRH)
?
[Raw transfer]




GDP_M_13(2AN9)
KGUA_ECOLI
[Raw transfer]




5GP_B_8(2J41)
KGUA_STAAC
[Raw transfer]




5GP_C_11(2J41)
KGUA_STAAC
[Raw transfer]




5GP_M_13(2ANB)
KGUA_ECOLI
[Raw transfer]




5GP_A_4(3TR0)
KGUA_COXBU
[Raw transfer]




5GP_D_4(1GKY)
KGUA_YEAST
[Raw transfer]




5GP_A_4(3TR0)
KGUA_COXBU
[Raw transfer]




5GP_D_4(1GKY)
KGUA_YEAST
[Raw transfer]




5GP_D_4(1EX7)
KGUA_YEAST
[Raw transfer]




FMT_B_2(1Z8F)
KGUA_MYCTU
[Raw transfer]




FMT_A_3(1S4Q)
KGUA_MYCTU
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




ADP_C_3(1LVG)
KGUA_MOUSE
[Raw transfer]




POP_A_3(2QOR)
?
[Raw transfer]




EPE_G_7(1Z6G)
?
[Raw transfer]




55 HHSearch 82.6567%-103 - C4 -3TAU - KGUA_LISMO -
3 PsiBlast_PDB 81.6764%-103 - C4 -3TAU - KGUA_LISMO -
1 PsiBlast_PDB 78.7263%-115 - C4 -4QRH - ? -
21 PsiBlast_CBE 78.1663%-100 - C4 -4QRH 10.4 ?
57 HHSearch 77.8863%-101 - C4 -4QRH 10.6 ?
22 PsiBlast_CBE 77.8763%-101 - C4 -4QRH 10.6 ?
56 HHSearch 77.3163%-102 - C4 -4QRH 10.6 ?
23 PsiBlast_CBE 77.3163%-102 - C4 -4QRH 10.6 ?
25 PsiBlast_CBE 75.3163%-108 - C4 -2J41 7.5 KGUA_STAAC
2 PsiBlast_PDB 75.0363%-118 - C4 -2J41 - KGUA_STAAC -
24 PsiBlast_CBE 74.5363%-109 - C4 -2J41 7.3 KGUA_STAAC
26 PsiBlast_CBE 74.3163%-110 - C4 -2J41 7.2 KGUA_STAAC
13 PsiBlast_PDB 68.8437%-106 - C4 -3TR0 6.6 KGUA_COXBU
6 PsiBlast_PDB 68.4241% -27 - C4 -2ANC - KGUA_ECOLI -
9 PsiBlast_PDB 67.4240% -20 - C4 -1S96 - KGUA_ECOLI -
4 PsiBlast_PDB 67.2941% -28 - C4 -2AN9 6.3 KGUA_ECOLI
27 PsiBlast_CBE 67.2841% -23 - C4 -2F3T 2.8 KGUA_ECOLI
28 PsiBlast_CBE 66.5541% -26 - C4 -2F3T 4.0 KGUA_ECOLI
65 HHSearch 66.0437% -74 - C4 -3TR0 6.6 KGUA_COXBU
8 PsiBlast_PDB 66.0041% -29 - C4 -2F3T 3.4 KGUA_ECOLI
5 PsiBlast_PDB 65.6641% -18 - C4 -2ANB 5.9 KGUA_ECOLI
31 PsiBlast_CBE 65.6141% -19 - C4 -2AN9 6.7 KGUA_ECOLI
29 PsiBlast_CBE 65.4741% -29 - C4 -2F3T 3.5 KGUA_ECOLI
11 PsiBlast_PDB 60.6240% -33 - C4 -1EX7 7.0 KGUA_YEAST
20 PsiBlast_PDB 60.2039% -21 - C4 -1Z8F 3.4 KGUA_MYCTU
15 PsiBlast_PDB 60.1040% -21 - C4 -1S4Q 3.5 KGUA_MYCTU
12 PsiBlast_PDB 60.0540% -31 - C4 -1GKY 7.4 KGUA_YEAST
68 HHSearch 59.8840% -41 * C4 *1GKY 7.4 KGUA_YEAST
66 HHSearch 56.4236% -37 - C4 -2QOR 2.3 ?