@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y1F6: (2018-01-25 )
MLKIVKRISLTSAIAAAVFMVIQVLADLYLPTLTSNIIDKGVAQGDVDYIWHTGFVMIGFSLISILAAIANTFFATRESQKLGKQLRTDVYKKSESLTKDAFDKYGTASLITRTTNDVTQIQMVTQMFLRMMINAPITLIGASILAYQKDHQLTKIFLVVIPVMIILIGGIMYFAVPLFKSMQKKTDRLNLVFREGLTGVRVIRAFDKTRFEENRFDLANKDYTNTAIKVNTIVALMMPMMTLIMSGTNVAITWFGGHYIADMTLEVGNLIAFMTYAMQILISFMMLSAIFIMVPRAQASADRINEVLDEKIGIHDPENPKTVSFAGKNATLAFNHVNYRYHGAEKLALEDIDFQAKSGEIVAIIGGTGSGKTTLVNLIPRLYDIESGSIQINGTDISDMTQYNLRELMGFVPQKAVLFSGTIRDNMQYGKPDATDEMIWKALEIAQAKDFVSEMEDGLDSHVEQGGGNFSGGQRQRLAIARALVKTADIYVFDDSFSALDFKTDANLRQALKTNMKESITVLVAQRVSTVMDADMILVLDEGKLVGKGTHEELLATNETYQEIVHSQLREEDLA

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(3QF4)
?
[Raw transfer]



ATP_D_5(3VX4)
?
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



ATP_A_3(3VX4)
?
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ADP_A_5(5L22)
?
[Raw transfer]



ADP_B_3(5L22)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]
2 PsiBlast_PDB 89.5739%-131 - C1 -3QF4 6.3 ?
3 PsiBlast_PDB 87.0739%-130 - C1 -4Q4A - ? -
104 HHSearch 86.3739% - - C1 -4Q4H - ? -
4 PsiBlast_PDB 86.0139% - - C1 -4Q4H - ? -
1 PsiBlast_PDB 85.6239%-119 - C1 -4Q4J - ? -
101 HHSearch 74.3425%-136 - C1 -5MKK - ? -
107 HHSearch 73.4229%-139 - C1 -3QF4 - Y288_THEMA -
8 PsiBlast_PDB 70.5127% - - C1 -3B5X - MSBA_VIBCH -
100 HHSearch 69.1927% - - C1 -3B5X - MSBA_VIBCH -
108 HHSearch 65.0229% - - C1 -4Q4H - Y288_THEMA -
94 HHSearch 63.1626% -79 - C1 -3B60 - MSBA_SALTY -
111 HHSearch 63.1328% -35 - C1 -5MKK - ? -
14 PsiBlast_PDB 62.5226% - - C1 -3B5W - MSBA_ECOLI -
9 PsiBlast_PDB 62.2426% - - C1 -3B5Y - MSBA_SALTY -
10 PsiBlast_PDB 62.1726% - - C1 -3B5Z 2.3 MSBA_SALTY
96 HHSearch 60.2928% -40 - C1 -4A82 - Y1866_STAAM -
5 PsiBlast_PDB 59.9130% -26 - C1 -2HYD - Y1866_STAAM -
7 PsiBlast_PDB 59.4730% -23 - C1 -4A82 - Y1866_STAAM -
6 PsiBlast_PDB 57.9930% -27 - C1 -2ONJ - Y1866_STAAM -
112 HHSearch 57.1927% -26 - C1 -3WME - ? -
65 PsiBlast_CBE 34.4933% -55 - C1 -5L22 5.4 ?
66 PsiBlast_CBE 28.8433% -51 - C1 -5L22 3.3 ?