@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y1F7: (2018-01-25 )
MSKTNTRPSHGPAGGPGHGGPGRNLGVKGEKPKNFWGTVRRLFGYMSKRMVAIIAVFVLAIAAVIFQIQTPKVLGKATTEIFKGVMAGAQQMQQGQQVTKFPIDFDKIAQIIATVIVMYLISAVFNFLQQFIMTRVSQRTVYELRHDLEAKMNRVPISYYDTHTNGDIMSRAINDMDNIASTLQQNLTQFVTSAVTLIGVIVMMLSISWQLTLVALLMIPLSLIIVMIVAPKSQVFFADQQKSLGLLNNQVEETYGGHTIVKTFNHTEKDQEVFEKENQNLYAAGWKAQFISAIIMPLMNFVKNLGYVFVAVLGGVKVANGNMTLGDVQAFLQYTTQFSQPITQLASLMNTIQSTVASAERVFEVLDEEEMSNEKSGLPEEKDTPYKVRFENVQFGYTPDNLLMTDFNLDVKPGEMVAIVGPTGAGKTTLINLLERFYDVSGGSIRYDGVDTRDLSRDELRAQFSMVLQDTWLFTGSIYDNIKYGNDDATDEQIIEAAKAAHVDDFVRKLPEGYNTVLNEDASNISQGQRQLITIARAFLANPDVLILDEATSSVDTRTEILIQKAMNRLLENRTSFVVAHRLSTIRDADNIIVMNHGSIVETGNHDTLMEKDGFYADLYNSQFSEEEAS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]



128_A_2(2PMK)

[Raw transfer]



ATP_A_2(3NH9)

[Raw transfer]



ANP_A_6(3B5Y)
MSBA_SALTY
[Raw transfer]



ANP_D_7(3B5Y)
MSBA_SALTY
[Raw transfer]



ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]



ADP_C_7(3B5Z)
MSBA_SALTY
[Raw transfer]
121 HHSearch 87.9644%-135 - C3 -3QF4 - Y288_THEMA -
122 HHSearch 84.1544% - - C3 -4Q4H - Y288_THEMA -
3 PsiBlast_PDB 83.8542% - - C3 -4Q4H - Y288_THEMA -
120 HHSearch 72.0932% - - C3 -4Q4H - ? -
112 HHSearch 71.8929% - - C3 -3B5X - MSBA_VIBCH -
1 PsiBlast_PDB 70.8142% 4 - C3 -3QF4 - Y288_THEMA -
2 PsiBlast_PDB 70.1542% 6 - C3 -4Q4A - Y288_THEMA -
123 HHSearch 70.0433% -70 - C3 -5MKK - ? -
20 PsiBlast_PDB 69.3831% 0 - C- -4F4C - PGP1_CAEEL -
4 PsiBlast_PDB 69.0842% 3 - C3 -4Q4J - Y288_THEMA -
11 PsiBlast_PDB 66.5731% - - C3 -3B5Z 2.3 MSBA_SALTY
30 PsiBlast_CBE 66.5531% - - C3 -3B5Z - MSBA_SALTY -
29 PsiBlast_CBE 66.5531% - - C3 -3B5Z 2.3 MSBA_SALTY
13 PsiBlast_PDB 66.5131% - - C3 -3B5X - MSBA_VIBCH -
33 PsiBlast_CBE 66.4831% - - C3 -3B5Y 1.9 MSBA_SALTY
32 PsiBlast_CBE 66.4731% - - C3 -3B5Y 1.9 MSBA_SALTY
10 PsiBlast_PDB 66.4731% - - C3 -3B5Y - MSBA_SALTY -
28 PsiBlast_CBE 66.3431% - - C3 -3B5Z - MSBA_SALTY -
31 PsiBlast_CBE 66.2431% - - C3 -3B5Y - MSBA_SALTY -
114 HHSearch 65.6225% -65 - C3 -5MKK - ? -