@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y1M4: (2018-01-26 )
MNKLLKKEILCYLENQTAFFDLEHMNEVFTAQRLADHFGVKRNTVSHYLNQLNDEQLLVKINSRPVIYFHKEAFEKQFFKLRTNFYFSIDDLKEEQPFFAQPKDLFSFMIGYDASLKESIEQIKTALYYPDGGLPLLITGESGTGKSYLVNLVYQYCLLHDLLEDSAPFITFNCAQYADNPELLTSNLFGHVKGAYTGAEENKKGAFEAADGGILFLDEVHRLTPEGQEKLFTYLDQGVIYRMGEPNLSRRIKTRLFFATTEEITSHFLTTFIRRIPIRIELPALNQRSRNERLELIYSFFLEEQRKMGSPLSVSGPALSLLTSQKLSGNIGELKNIVKVSAAKAYAEQREQPEIHVTIHHLQKELLAQPITKNTAQQGIYITQDQTLEQLMEKQQPEQQRIVKSFEQILIDFKKNNCLLYSCEGKLKQEVIQLFDFLLFETSRQEKHELLVYWTQSIRETFRQMETAYQIKFDGNSVYALSYYLYQRSTIKWLPEEHDIIQLIKELEQQVSQSYPSSYHYVQRILELSKIKLDIEDTSMDRILLTIYLKKAKWSKEKRLPKAMIAAHGYATASSMANVVNRLLQEDLFESFDMPLDVTPQQIASEILDYCENSDVSNGLIILVDMGSLKEIHQFFKKQLSVPLLILNNVTTPLAITVGECLQKNVSLEEIAEETVRQIQPEWRLLYPEENKPKALITTCFTGIGTAVHLSELLEKSLPTACQLKIIPYEYQQLKDKKNSDPLFSIYEVVGMIGTTDPDITNIDYLSLEDLISGEKMSVLAEWLDTTMNASEKEIFNQRIIRNFSLEKVLDSVTILDTEKVMGEIDHFMRELEVQLNRSISNPKKLALYVHVSCLIERLIRQMPIETYQGLEKWKQCQKEGLSAIKSAFSVIEEHYSVMIPNSEIAYIYDILSEDTEFLSIEEEF

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_B_9(1NY5)
?
[Raw transfer]




ATP_A_3(2C9C)
PSPF_ECOLI
[Raw transfer]




ATP_A_2(5EP4)
?
[Raw transfer]




ATP_A_2(2C96)
PSPF_ECOLI
[Raw transfer]




ATP_A_2(4QNR)
PSPF_ECOLI
[Raw transfer]




ANP_A_2(2C99)
PSPF_ECOLI
[Raw transfer]




AGS_A_2(5EXS)
?
[Raw transfer]




ADP_A_3(3DZD)
?
[Raw transfer]




ADP_A_2(2C98)
PSPF_ECOLI
[Raw transfer]




AMP_A_2(2VII)
PSPF_ECOLI
[Raw transfer]




ADP_B_4(4BT0)
?
[Raw transfer]




ADP_B_4(4BS1)
?
[Raw transfer]




ADP_B_4(4BT1)
?
[Raw transfer]




EDO_A_5(5EXP)
?
[Raw transfer]




115 HHSearch 78.3629% -68 * C2 *5EP2 - ? -
108 HHSearch 77.7228% -80 - C2 -4QHT - ? -
110 HHSearch 77.2429% -69 - C2 -5EP1 - ? -
88 PsiBlast_CBE 75.4633% 0 - C- -1OJL - ZRAR_SALTY -
6 PsiBlast_PDB 75.4633% 0 - C- -1OJL - ZRAR_SALTY -
109 HHSearch 73.3428% -73 - C2 -4QHS - ? -
116 HHSearch 71.7929% -58 - C2 -1OJL - ZRAR_SALTY -
10 PsiBlast_PDB 70.8934% -88 - C2 -5EP0 - ? -
112 HHSearch 70.2728% -60 - C2 -5EXS - ? -
1 PsiBlast_PDB 69.8734% -37 - C2 -1NY5 - ? -
21 PsiBlast_CBE 69.7834% -35 - C2 -1NY5 7.2 ?
113 HHSearch 69.5628% -60 - C2 -5EXP - ? -
13 PsiBlast_PDB 68.8234% -83 - C2 -5EP3 - ? -
11 PsiBlast_PDB 68.8034% -79 - C2 -5EP1 - ? -
85 PsiBlast_CBE 68.7833% -40 - C2 -3M0E - ? -
84 PsiBlast_CBE 68.2733% -42 - C2 -3M0E - ? -
86 PsiBlast_CBE 68.2333% -40 - C2 -3M0E - ? -
44 PsiBlast_CBE 68.1934% -35 - C2 -4LZZ - ? -
83 PsiBlast_CBE 68.0733% -39 - C2 -3M0E - ? -
81 PsiBlast_CBE 68.0333% -38 - C2 -3M0E - ? -
7 PsiBlast_PDB 66.9836% -69 - C2 -3DZD 5.0 ?
94 PsiBlast_CBE 57.7838%-125 - C2 -4BT1 5.1 ?
96 PsiBlast_CBE 57.5938%-125 - C2 -4BS1 5.0 ?
95 PsiBlast_CBE 57.2338%-125 - C2 -4BT0 5.2 ?
9 PsiBlast_PDB 57.0835% 7 - C2 -2C9C 6.2 PSPF_ECOLI
15 PsiBlast_PDB 53.0435% -4 - C2 -2C96 6.4 PSPF_ECOLI
16 PsiBlast_PDB 52.5935% 6 - C2 -2C98 5.5 PSPF_ECOLI
17 PsiBlast_PDB 52.5835% 9 - C2 -2C99 6.2 PSPF_ECOLI
19 PsiBlast_PDB 51.4935% 7 - C2 -4QNR 5.4 PSPF_ECOLI
18 PsiBlast_PDB 50.7035% 9 - C2 -2VII 4.5 PSPF_ECOLI