@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y1T3: (2018-01-27 )
MQIGKIIKVSGPLVMAENMSDASIQDMCLVGDLGVIGEIIEMRGDVASIQVYEETSGIGPGEPVRSTGEALSVELGPGIISQMFDGIQRPLDTFMEITQSNFLGRGVQLPALDHEKKWWFEPTVEAGETVSAGDVIGIVEETKVIKHKIMVPNGIKGTIKTIEKGSFTIDETVCVIETENGDKNLTMLQKWPVRRSRPIKEKLNPDAPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWADVDMVVYVGCGERGNEMTDVLNEFPELIDPNTGESLMERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSEGREGSITAISAVSPSGGDISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSIDWIQSYSLYSTEVGKYMDHILQADWASMVTEGMRILQEEQQLNEIVRLVGIDSLSDNDRLTLEVAKSIREDYLQQNAFDDVDTFTSREKQFKMLKMILTFGEEGRRALSLGAYLSEIMDGTVSIRERIGRSKYIPETELEKLDQIIGEIKQTMQTIVSEGGMSND

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_3(5BN4)
VATA_NANEQ
[Raw transfer]




ANP_A_3(5BN4)
VATA_NANEQ
[Raw transfer]




ADP_A_3(5BN3)
VATA_NANEQ
[Raw transfer]




ADP_A_3(5BN3)
VATA_NANEQ
[Raw transfer]




MRD_A_2(3ND8)
VATA_PYRHO
[Raw transfer]




MPD_A_7(3P20)
VATA_PYRHO
[Raw transfer]




MPD_A_3(3I4L)
VATA_PYRHO
[Raw transfer]




MPD_B_2(1VDZ)
VATA_PYRHO
[Raw transfer]




MPD_A_5(3I72)
VATA_PYRHO
[Raw transfer]




MPD_B_2(1VDZ)
VATA_PYRHO
[Raw transfer]




MPD_A_2(3QIA)
?
[Raw transfer]




MPD_A_3(3I73)
VATA_PYRHO
[Raw transfer]




MPD_A_2(3QIA)
?
[Raw transfer]




MPD_A_6(3QG1)
VATA_PYRHO
[Raw transfer]




MPD_A_2(3MFY)
VATA_PYRHO
[Raw transfer]




MPD_A_8(3M4Y)
VATA_PYRHO
[Raw transfer]




MPD_A_7(3SE0)
VATA_PYRHO
[Raw transfer]




MPD_A_2(3SDZ)
VATA_PYRHO
[Raw transfer]




MPD_A_2(3IKJ)
VATA_PYRHO
[Raw transfer]




MPD_A_5(3QJY)
VATA_PYRHO
[Raw transfer]




MPD_A_5(3QJY)
VATA_PYRHO
[Raw transfer]




1 PsiBlast_PDB 82.2689% -79 - C5 -3VR6 - NTPA_ENTHA -
27 PsiBlast_CBE 82.1589% -74 - C5 -3VR6 - NTPA_ENTHA -
23 PsiBlast_CBE 82.0389% -70 - C5 -5KNC - NTPA_ENTHA -
24 PsiBlast_CBE 81.5089% -75 - C5 -5KNB - NTPA_ENTHA -
25 PsiBlast_CBE 81.4689% -76 - C5 -5KNB - NTPA_ENTHA -
21 PsiBlast_CBE 81.4389% -71 - C5 -5KND - NTPA_ENTHA -
4 PsiBlast_PDB 81.3589% -77 - C5 -5KND - NTPA_ENTHA -
22 PsiBlast_CBE 81.2789% -78 - C5 -5KNC - NTPA_ENTHA -
98 HHSearch 81.1089% -69 - C5 -3VR4 - NTPA_ENTHA -
2 PsiBlast_PDB 81.0289% -70 - C5 -5KNB - NTPA_ENTHA -
99 HHSearch 80.9389% -71 - C5 -3VR4 - NTPA_ENTHA -
3 PsiBlast_PDB 80.8489% -69 - C5 -5KNC - NTPA_ENTHA -
26 PsiBlast_CBE 80.8189% -72 - C5 -3VR6 - NTPA_ENTHA -
7 PsiBlast_PDB 80.4185% -77 - C5 -3VR4 - NTPA_ENTHA -
6 PsiBlast_PDB 79.4885% -71 - C5 -3VR3 - NTPA_ENTHA -
5 PsiBlast_PDB 68.8485%-440 - C5 -3VR2 - NTPA_ENTHA -
101 HHSearch 68.6547% 0 - C- -5D80 - VATA_YEAST -
100 HHSearch 68.6547% 0 - C- -5D80 - VATA_YEAST -
8 PsiBlast_PDB 68.2485%-430 - C5 -3VR5 - NTPA_ENTHA -
107 HHSearch 67.3251% -68 - C5 -5BN3 7.5 VATA_NANEQ
106 HHSearch 67.0451% -66 - C5 -5BN4 7.2 VATA_NANEQ
36 PsiBlast_CBE 66.2952% -70 * C5 *5BN4 7.2 VATA_NANEQ
37 PsiBlast_CBE 66.2752% -73 - C5 -5BN3 7.5 VATA_NANEQ
19 PsiBlast_PDB 62.8058% 18 - C5 -3M4Y 2.8 VATA_PYRHO
102 HHSearch 62.7459% 25 - C5 -3QIA 2.7 ?
12 PsiBlast_PDB 62.6958% 25 - C5 -3QJY 2.7 VATA_PYRHO
11 PsiBlast_PDB 62.6458% 26 - C5 -3QIA 2.7 ?
103 HHSearch 62.5259% 24 - C5 -3QJY 2.7 VATA_PYRHO
10 PsiBlast_PDB 61.7258% 18 - C5 -3IKJ 2.6 VATA_PYRHO
13 PsiBlast_PDB 61.4158% 20 - C5 -3SDZ 2.0 VATA_PYRHO
30 PsiBlast_CBE 61.2658% 18 - C5 -3MFY 3.3 VATA_PYRHO
120 Fugue 60.9858% 25 - C5 -1VDZ 2.9 VATA_PYRHO
9 PsiBlast_PDB 60.8058% 24 - C5 -1VDZ 2.9 VATA_PYRHO
28 PsiBlast_CBE 60.3758% 21 - C5 -3QG1 2.5 VATA_PYRHO
14 PsiBlast_PDB 60.0058% 17 - C5 -3SE0 3.6 VATA_PYRHO
16 PsiBlast_PDB 59.9258% 22 - C5 -3I72 3.5 VATA_PYRHO
18 PsiBlast_PDB 59.6358% 21 - C5 -3P20 2.6 VATA_PYRHO
29 PsiBlast_CBE 59.3658% 28 - C5 -3ND8 2.1 VATA_PYRHO
17 PsiBlast_PDB 59.1158% 21 - C5 -3I73 2.9 VATA_PYRHO
15 PsiBlast_PDB 58.2058% 21 - C5 -3I4L 3.0 VATA_PYRHO