@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y2G6: (2018-01-30 )
MRLTDFSAIHLPAVEKEILSFLDEHTTDRGLYDAMSYSVKAGGKRIRPLLLLTAVASFDEPIDVPVYQVAAALEMVHTYSLIHDDLPAMDNDDLRRGKPTNHKVFGEALAILAGDGLLTGAFQLISMAHLGNSPKLLLLQQLAVCAGSQGMVAGQAADIEGESKKLSLEELAFIHERKTGHLIRYALLAGGILAKQPEEILLLLQRLAEHLGLAFQIRDDLLDVIGTTKTLGKTAGKDERMEKNTYPRLLGLEKTREALEIELLSANKIIDKLEEDVFSFDGGLMRQMIKQFDVEK

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIS_B_12(1RQJ)
ISPA_ECOLI
[Raw transfer]




RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]




RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]




DST_A_10(1RQI)
ISPA_ECOLI
[Raw transfer]




GST_A_4(4LLS)
?
[Raw transfer]




DST_D_11(3OAB)
?
[Raw transfer]




DST_D_11(3OAB)
?
[Raw transfer]




IPE_A_4(4LLT)
?
[Raw transfer]




DST_D_6(3OAC)
?
[Raw transfer]




IPE_B_9(4LLT)
?
[Raw transfer]




DST_D_11(3KRF)
?
[Raw transfer]




DST_B_9(1RQI)
ISPA_ECOLI
[Raw transfer]




GRG_A_3(2J1P)
GGPPS_SINAL
[Raw transfer]




GST_B_9(4LLS)
?
[Raw transfer]




IPE_C_18(3Q1O)
?
[Raw transfer]




IPE_A_7(3Q1O)
?
[Raw transfer]




IPE_B_13(3Q1O)
?
[Raw transfer]




IPE_B_13(3Q1O)
?
[Raw transfer]




DST_D_11(3KRO)
?
[Raw transfer]




IPE_D_24(3Q1O)
?
[Raw transfer]




GOL_C_16(3M9U)
?
[Raw transfer]




IPE_A_3(4LFE)
?
[Raw transfer]




IPE_A_6(3PDE)
?
[Raw transfer]




IPE_A_6(3PDE)
?
[Raw transfer]




IPE_B_13(3PDE)
?
[Raw transfer]




GOL_B_5(4F62)
?
[Raw transfer]




IPE_D_22(3PDE)
?
[Raw transfer]




GOL_A_5(3Q2Q)
?
[Raw transfer]




IPE_D_22(3PDE)
?
[Raw transfer]




IPE_B_7(3OYR)
?
[Raw transfer]




GOL_A_4(4F62)
?
[Raw transfer]




IPE_B_7(4LFE)
?
[Raw transfer]




IPR_A_9(1RQJ)
ISPA_ECOLI
[Raw transfer]




IPE_A_4(4LFG)
?
[Raw transfer]




IPR_B_11(1RQJ)
ISPA_ECOLI
[Raw transfer]




IPE_B_9(4LFG)
?
[Raw transfer]




DMA_A_6(4GP2)
?
[Raw transfer]




IPE_A_4(3WJO)
?
[Raw transfer]




DMA_A_5(4GP2)
?
[Raw transfer]




POP_A_3(3OYR)
?
[Raw transfer]




1 PsiBlast_PDB 99.9658%-112 - C- -3P8L - ? -
80 HHSearch 83.9361% -64 - C- -3P8L - ? -
81 HHSearch 80.4561% -59 - C- -3P8L - ? -
5 PsiBlast_PDB 71.2443%-112 - C1 -4LFE 3.1 ?
29 PsiBlast_CBE 69.8043% -89 - C1 -4LFG 5.2 ?
76 HHSearch 68.7650% -68 - C1 -5AYP - ISPA_GEOSE -
70 HHSearch 68.2541% -58 - C- -1RTR - ? -
30 PsiBlast_CBE 67.8943% -89 - C1 -4LFE 5.1 ?
6 PsiBlast_PDB 67.6243% -87 - C1 -4LFG 5.4 ?
21 PsiBlast_CBE 65.3947% -53 - C1 -3PDE 3.0 ?
63 HHSearch 64.5844% -32 * C1 *3PDE 3.0 ?
24 PsiBlast_CBE 64.5347% -49 - C1 -3M9U - ? -
8 PsiBlast_PDB 63.8246% -66 - C- -1RTR - ? -
23 PsiBlast_CBE 63.7947% -50 - C1 -3M9U 2.3 ?
4 PsiBlast_PDB 63.6347% -53 - C1 -3PDE 3.1 ?
3 PsiBlast_PDB 63.4847% -51 - C1 -3M9U - ? -
72 HHSearch 63.3240% -88 - C1 -3M0G - ? -
75 HHSearch 63.2050% -59 - C1 -5AYP - ISPA_GEOSE -
22 PsiBlast_CBE 62.4147% -52 - C1 -3PDE 3.1 ?
64 HHSearch 62.4044% -34 - C1 -3PDE 3.1 ?
73 HHSearch 62.0539% -60 - C1 -3OAB 2.8 ?
83 HHSearch 58.6440% 2 - C1 -1RQJ 5.5 ISPA_ECOLI
66 HHSearch 55.9042% -69 - C1 -4F62 2.4 ?
67 HHSearch 55.4642% -64 - C1 -4F62 2.4 ?
82 HHSearch 54.7634% -31 - C1 -3Q1O 4.0 ?
32 PsiBlast_CBE 47.6847% -5 - C1 -1RQJ 4.8 ISPA_ECOLI
33 PsiBlast_CBE 47.0647% -8 - C1 -1RQI 3.9 ISPA_ECOLI
11 PsiBlast_PDB 46.1847% -7 - C1 -1RQJ 5.5 ISPA_ECOLI
12 PsiBlast_PDB 45.9847% -7 - C1 -1RQI 3.4 ISPA_ECOLI
62 PsiBlast_CBE 44.0331% -73 - C1 -4GP2 3.7 ?
61 PsiBlast_CBE 43.6633%-103 - C1 -3Q2Q 2.0 ?
27 PsiBlast_CBE 42.1348% 3 - C1 -3KRO 3.1 ?
35 PsiBlast_CBE 41.0344% -19 - C1 -4LLS 5.2 ?
55 PsiBlast_CBE 40.9134% -68 - C1 -3WJO 2.5 ?
26 PsiBlast_CBE 39.8948% 11 - C1 -3OAB 2.8 ?
25 PsiBlast_CBE 39.8948% 9 - C1 -3OAC 2.9 ?
28 PsiBlast_CBE 39.3848% 5 - C1 -3KRF 2.9 ?
13 PsiBlast_PDB 39.1244% -18 - C1 -4LLS 5.7 ?
9 PsiBlast_PDB 38.7543% -11 - C1 -2J1P 6.9 GGPPS_SINAL
34 PsiBlast_CBE 38.5444% -16 - C1 -4LLT 3.4 ?
14 PsiBlast_PDB 38.3144% -13 - C1 -4LLT 3.8 ?
43 PsiBlast_CBE 36.6339% 2 - C1 -3Q1O 4.0 ?
42 PsiBlast_CBE 36.3339% -4 - C1 -3Q1O 3.9 ?
41 PsiBlast_CBE 34.7839% -2 - C1 -3Q1O 3.9 ?
19 PsiBlast_PDB 34.0539% 4 - C1 -3Q1O 4.1 ?
60 PsiBlast_CBE 29.2234% -3 - C1 -3OYR 3.5 ?