@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y2R8: (2018-02-01 )
MKVTDTKLTDVKIVEMDVFGDHRGFFTESYSKAKFAEHGLKYDFVQDNHSLSAEAGVLRGLHFQKGEAAQTKLIRVVTGAVLDVVVDIRKGSPTYGQWDGFILSEHNHRQLLVPKGYAHGFVTLTPNVNFLYKCDNYYNAEADGGIAFDDPDLAIDWPIDPSRAIMSEKDHRHPTLKEFEAENPFVYGEI

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TDO_A_3(2IXK)
RMLC_PSEAE
[Raw transfer]




TDO_A_3(2IXK)
RMLC_PSEAE
[Raw transfer]




TRH_D_8(2IXC)
RMLC_MYCTU
[Raw transfer]




TDO_B_4(2IXK)
RMLC_PSEAE
[Raw transfer]




TRH_A_3(2IXH)
RMLC_PSEAE
[Raw transfer]




DAU_A_4(1NYW)
?
[Raw transfer]




TRH_B_4(2IXH)
RMLC_PSEAE
[Raw transfer]




DAU_B_3(1NYW)
?
[Raw transfer]




TDX_A_8(1NZC)
?
[Raw transfer]




GOL_A_7(1DZR)
RMLC_SALTY
[Raw transfer]




GOL_A_7(1DZR)
RMLC_SALTY
[Raw transfer]




GOL_A_7(1DZR)
RMLC_SALTY
[Raw transfer]




ATY_D_6(1DZT)
RMLC_SALTY
[Raw transfer]




TDX_B_7(1NZC)
?
[Raw transfer]




SRT_C_3(1RTV)
RMLC_PSEAE
[Raw transfer]




SRT_A_3(2IXJ)
RMLC_PSEAE
[Raw transfer]




TYD_A_4(3RYK)
?
[Raw transfer]




TYD_C_3(1EPZ)
RMLC_METTH
[Raw transfer]




GOL_A_3(1OFN)
?
[Raw transfer]




TPE_D_5(1DZT)
RMLC_SALTY
[Raw transfer]




TYD_B_5(2IXI)
RMLC_PSEAE
[Raw transfer]




SRT_A_4(2IXI)
RMLC_PSEAE
[Raw transfer]




POP_A_3(3RYK)
?
[Raw transfer]




POP_A_3(3RYK)
?
[Raw transfer]




TYD_A_3(2IXI)
RMLC_PSEAE
[Raw transfer]




1 PsiBlast_PDB 91.8156%-101 - C6 -3RYK 3.6 ?
21 PsiBlast_CBE 89.7256% -92 - C6 -3RYK 2.6 ?
74 HHSearch 87.9057% -57 - C6 -3RYK 3.6 ?
57 Fugue 87.7151% -6 - C6 -1DZR 3.1 RMLC_SALTY
2 PsiBlast_PDB 87.1352% -24 - C6 -1DZR 3.1 RMLC_SALTY
58 Fugue 86.9751% -5 - C6 -1DZR 3.1 RMLC_SALTY
22 PsiBlast_CBE 85.8052% -20 - C6 -1DZT 3.9 RMLC_SALTY
3 PsiBlast_PDB 85.5852% -23 - C6 -1DZT 4.0 RMLC_SALTY
23 PsiBlast_CBE 85.1052% -23 - C6 -1DZR - RMLC_SALTY -
6 PsiBlast_PDB 84.6050% -31 - C6 -2IXI 4.3 RMLC_PSEAE
5 PsiBlast_PDB 83.8947% -76 - C6 -1EPZ 2.7 RMLC_METTH
75 HHSearch 83.6352% -25 - C6 -1DZR - RMLC_SALTY -
4 PsiBlast_PDB 83.2447% -77 - C6 -1EP0 - RMLC_METTH -
24 PsiBlast_CBE 82.8650% -31 - C6 -2IXK 4.8 RMLC_PSEAE
26 PsiBlast_CBE 82.5950% -36 - C6 -2IXH 5.8 RMLC_PSEAE
25 PsiBlast_CBE 82.5050% -28 - C6 -2IXI 2.7 RMLC_PSEAE
7 PsiBlast_PDB 81.9650% -26 - C6 -2IXK 4.6 RMLC_PSEAE
8 PsiBlast_PDB 81.7050% -36 - C6 -1RTV 3.7 RMLC_PSEAE
10 PsiBlast_PDB 81.5550% -32 - C6 -2IXH 6.3 RMLC_PSEAE
9 PsiBlast_PDB 81.2250% -33 - C6 -2IXJ 3.4 RMLC_PSEAE
73 HHSearch 80.7048% -18 - C6 -2IXK 3.9 RMLC_PSEAE
27 PsiBlast_CBE 72.7639% -6 - C6 -2IXC 6.1 RMLC_MYCTU
34 PsiBlast_CBE 71.5331% -28 - C6 -1OFN 2.0 ?