@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y2W4: (2018-02-02 )
MNTVTVIGSINMDTTLRLTNMPKPGETMHAHEIFHAGGGKGANQAVAAKRSGARTSFIGGVGADSEGQQLLDLLTKENIDTSGIAEIQGATTGQAMIMVDAAGENSILIHAGANNAFHEQEVLKNKQLITNSDFIIAQFESSLDATILAFSIAKDAGKTTILNPAPARETIPTELLEKTDIIIPNETETEIITGIRVTDHNSLVAAAEKLHELGIGTVIITLGSAGAFYHTEKEHGIVPAFKVDAVDTTAAGDTFIGALSSTLQPDLSNLKEAILYGNLASSVAVQSYGAQPSIPYREALEQSAV

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_B_9(1GQT)
RBSK_ECOLI
[Raw transfer]



ACP_A_6(1GQT)
RBSK_ECOLI
[Raw transfer]



ACP_B_9(1GQT)
RBSK_ECOLI
[Raw transfer]



ADP_B_9(4XDA)
?
[Raw transfer]



ADP_B_9(4XDA)
?
[Raw transfer]



ATP_D_9(3IKH)
?
[Raw transfer]



ADP_D_15(4XDA)
?
[Raw transfer]



ADP_C_12(4XCK)
?
[Raw transfer]



ADP_B_18(1RK2)
RBSK_ECOLI
[Raw transfer]



ADP_A_17(1RK2)
RBSK_ECOLI
[Raw transfer]



ADP_D_14(4XCK)
?
[Raw transfer]



ADP_C_12(4XDA)
?
[Raw transfer]



ADP_I_9(1RKD)
RBSK_ECOLI
[Raw transfer]



ADP_I_9(1RKD)
RBSK_ECOLI
[Raw transfer]



ADP_C_19(1RK2)
RBSK_ECOLI
[Raw transfer]



AMP_B_6(5BYF)
RBSK_HUMAN
[Raw transfer]



ACP_C_12(1GQT)
RBSK_ECOLI
[Raw transfer]



ADP_A_6(4XDA)
?
[Raw transfer]



ADP_A_6(4XCK)
?
[Raw transfer]



ADP_D_20(1RK2)
RBSK_ECOLI
[Raw transfer]



ADP_B_9(4XCK)
?
[Raw transfer]



AMP_A_3(5BYF)
RBSK_HUMAN
[Raw transfer]



GOL_A_2(3RY7)
?
[Raw transfer]



RIB_A_3(3GO6)
?
[Raw transfer]



RIB_D_15(1GQT)
RBSK_ECOLI
[Raw transfer]



RIB_C_3(1RKS)
RBSK_ECOLI
[Raw transfer]



RIB_A_3(3GO7)
?
[Raw transfer]



RIB_A_3(3GO6)
?
[Raw transfer]



RIB_A_3(3GO6)
?
[Raw transfer]



EDO_A_12(2RBC)
?
[Raw transfer]
26 PsiBlast_CBE 84.9247% -75 - C1 -1GQT 5.8 RBSK_ECOLI
25 PsiBlast_CBE 84.7847% -75 - C1 -1GQT 4.9 RBSK_ECOLI
23 PsiBlast_CBE 84.6747% -74 - C1 -1RK2 6.4 RBSK_ECOLI
5 PsiBlast_PDB 84.4447% -75 - C1 -1GQT 6.1 RBSK_ECOLI
2 PsiBlast_PDB 84.2547% -72 - C1 -1RK2 6.1 RBSK_ECOLI
22 PsiBlast_CBE 84.1147% -72 - C1 -1RK2 6.3 RBSK_ECOLI
3 PsiBlast_PDB 84.0947% -75 - C1 -1RKA - RBSK_ECOLI -
6 PsiBlast_PDB 83.9747% -76 - C1 -1RKD 6.0 RBSK_ECOLI
24 PsiBlast_CBE 83.5947% -74 - C1 -1GQT 3.8 RBSK_ECOLI
21 PsiBlast_CBE 83.4847% -72 - C1 -1RK2 5.9 RBSK_ECOLI
4 PsiBlast_PDB 82.8447% -78 - C1 -1RKS 3.6 RBSK_ECOLI
31 PsiBlast_CBE 82.5943% -69 - C1 -4XCK 5.9 ?
28 PsiBlast_CBE 81.7043% -69 - C1 -4XDA 5.7 ?
27 PsiBlast_CBE 81.0543% -70 - C1 -4XDA 6.1 ?
32 PsiBlast_CBE 81.0443% -72 - C1 -4XCK 4.7 ?
29 PsiBlast_CBE 80.5143% -72 - C1 -4XDA 5.6 ?
8 PsiBlast_PDB 80.4343% -69 - C1 -4XCK 5.7 ?
9 PsiBlast_PDB 80.3443% -71 - C1 -4XDA 5.6 ?
30 PsiBlast_CBE 79.8143% -69 - C1 -4XCK 5.2 ?
83 HHSearch 79.0247% 9 - C1 -1GQT 5.8 RBSK_ECOLI
84 HHSearch 78.3447% 10 - C1 -1RKD 6.0 RBSK_ECOLI
80 HHSearch 75.8847% 2 - C1 -3RY7 2.7 ?
82 HHSearch 75.5544% 5 - C1 -4XDA 5.6 ?
57 PsiBlast_CBE 60.9633% -53 - C1 -3GO6 3.0 ?
55 PsiBlast_CBE 60.3633% -51 - C1 -3GO7 3.1 ?
100 Fugue 60.3332% -38 - C1 -3GO6 3.1 ?
90 HHSearch 58.1832% 0 - C1 -3GO6 3.1 ?