@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y3C5: (2018-02-04 )
MNGDITRKQRSRFFATNVAAFAFIFFLLGFITLQILNQSAYRETDLSLEKINFDSRTVQLEIQRYQQGDPFLNPTQTEQNRTNMEQPLMEPSNDRFNTQVILWSKNGEILNKAAIGGRFNQIKELKMDTKNLNTIQNIELNEDSGSSALSFRSITKKAETNQDGVAYIQILENTNQIKNSLATFRTIMILCMIVFWILSIGISYYLSSLSMRPIILSWRRQKEFVENASHELRTPLTIIQNSLEHLFTKPNHTIIEESESIAQALSETRRLTGLTSDLLTIARNDSDQQLLSKQMINTQEYIEQLVKPFQEMAIIDGKEFILHNDATLEVPIDEKKIHQVLVILLDNALKYTNPEDKIILDSSVNHKEWLIHVKNTGPSISEEDQARIFDRFYREDQSRAKETGGYGLGLAIAKQVIEQHHGQISVSNYLPQGVDFKVQLPLKPKK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(4CB0)
CPXA_ECOLI
[Raw transfer]



ANP_B_7(4BIW)
CPXA_ECOLI
[Raw transfer]



ATP_A_5(5LFK)
?
[Raw transfer]



AN2_B_4(4U7O)
?
[Raw transfer]



AN2_A_3(4U7O)
?
[Raw transfer]



ACP_B_7(5C93)
?
[Raw transfer]



ADP_A_2(4JAU)
?
[Raw transfer]



ADP_A_3(4BIX)
CPXA_ECOLI
[Raw transfer]
51 Fugue 82.7723% - - C1 -4I5S - ? -
17 PsiBlast_PDB 59.8132% 17 - C1 -4CB0 7.3 CPXA_ECOLI
7 PsiBlast_PDB 59.3131% 31 - C1 -4JAU 6.6 ?
72 HHSearch 59.1229% 7 - C1 -4BIV - CPXA_ECOLI -
11 PsiBlast_PDB 59.1231% 14 - C1 -5LFK 7.6 ?
74 HHSearch 59.1132% - - C1 -4I5S - ? -
6 PsiBlast_PDB 58.6931% 18 - C1 -4JAS - ? -
50 Fugue 58.6523%-117 - C1 -1ID0 - -
3 PsiBlast_PDB 58.1231% 37 - C1 -4U7O 8.8 ?
4 PsiBlast_PDB 57.6831% 29 - C1 -4ZKI - ? -
8 PsiBlast_PDB 57.5831% 13 - C1 -4BIW - CPXA_ECOLI -
73 HHSearch 57.3030% 3 - C1 -4BIX - CPXA_ECOLI -
9 PsiBlast_PDB 57.3031% 10 - C1 -4BIX 5.3 CPXA_ECOLI
2 PsiBlast_PDB 56.7731% - - C1 -4U7N - ? -
16 PsiBlast_PDB 56.6332% 22 - C1 -4BIV - CPXA_ECOLI -
5 PsiBlast_PDB 56.6131% 35 - C1 -5C93 - ? -
38 PsiBlast_CBE 56.5731% 6 - C1 -4BIZ - CPXA_ECOLI -
14 PsiBlast_PDB 56.3631% 45 - C1 -4JAV - ? -
25 PsiBlast_CBE 56.2231% 8 - C1 -4BIY - CPXA_ECOLI -
10 PsiBlast_PDB 56.0031% 11 - C1 -4BIY - CPXA_ECOLI -