Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMYKVIAGSWTKFKEDAKYIREQVFIQEQGIAHEDEWDDFDSIAMHFMVYDEGQPIATARLLPQHS----VGRVAVLMLYRKQGIGKILMQHIIEYARQHKLPYLKLSAQTYVTAFYEALGFKVQGEVYQDCGIPHIDMTLALS
5JQ4 Chain:A ((15-144))-------------EDCFYIRKKVFVEEQGIPEESEIDEYESESIHLIGYDNGQPVATARIRPINETTVKIERVAVMKSHRGQGMGRMLMQAVESLAKDEGFYVATMNAQCHAIPFYESLNFKMRGNIFLEEGIEHIEMTKKLT


General information:
TITO was launched using:
RESULT:

Template: 5JQ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 475 -32034 -67.44 -254.24
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain A : 0.79

3D Compatibility (PKB) : -67.44
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.454

(partial model without unconserved sides chains):
PDB file : Tito_5JQ4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5JQ4-query.scw
PDB file : Tito_Scwrl_5JQ4.pdb: