Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNLIFLPGASGSTTFWHPLIEKLPQQYRAKIIGYPSFGDTP-ESLEVKSFEDLTNYVVNQIH-------DESVIIAQSMGGIFAVTAALQKPQLVKGLVLIATS-----------GGI---------NLEPFNVQDWREAYRQAFLKYPD----------WFITTN-------------ANYEEFLSDINIKTLLIWGDNDPVSPVQVGQYLNQKFENSTLYVVKGGDHQLAEKYADEVAVQIKNYLKGLM
1WOM Chain:A ((22-269))-SIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHLPYSSLKQMEARGHCPHMSHPDETIQLIGDYLKA--


General information:
TITO was launched using:
RESULT:

Template: 1WOM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 880 -36579 -41.57 -185.68
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -41.57
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.502

(partial model without unconserved sides chains):
PDB file : Tito_1WOM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1WOM-query.scw
PDB file : Tito_Scwrl_1WOM.pdb: