Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSRDYNCTTDDQLAWGIPSISHAWGLWALLGVVTVLLLISLAALLSQWTRGRRRNQEGQGPLSGRSAEEVPLYGNLHYLQTGRLSQEPRSEEQDPPSSGGLARGAEEAMCYTSLQ-LRPAQGRIPSSGNPIKYCEV-VLDSEPKPQAPGPEPELYASVCAQTRRGRASFPDQAYANSQPAPS
5U89 Chain:A ((315-397))-------------------------------------------------------------------------------------------------------GPTETTIWSTMSPL-------PSIGRPIWNTQVYVLDEQLQPVPPGVVGELYIA-------------------------


General information:
TITO was launched using:
RESULT:

Template: 5U89.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 102 2810 27.55 62.44
target 2D structure prediction score : 0.33
Monomeric hydrophicity matching model chain A : 0.59

3D Compatibility (PKB) : 27.55
2D Compatibility (Sec. Struct. Predict.) : 0.33
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.387

(partial model without unconserved sides chains):
PDB file : Tito_5U89.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5U89-query.scw
PDB file : Tito_Scwrl_5U89.pdb: