Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDD-GLSYIEDYHEVMTFPKINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVGQAFDFSFKYGTCLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIH--LKSKKFIDSLADWGQLLKEEKK
1U5K Chain:B ((2-235))RSRTANRSGIVIRRRVTPAGDIIVTLLTPQ-GKLKAIARG----PLSSSLNLFHHVGVQVYQGPHNDLASVKQAVLEGALPTL-AEPERYAFAHLMAEFADALFQ-GEFSEQAFDLFAASLRGVAHQPDPEWVALVMSYKLLGLAGVIPQTARCARCGAPD-PEHPDPLGGQLLCSKCAAL----PPYPPAVLDFLRHAVRRTVRASFEQPVPSADRPALWRALEKFVTVQVGGVHSWRQL------------------


General information:
TITO was launched using:
RESULT:

Template: 1U5K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1114 -56873 -51.05 -251.65
target 2D structure prediction score : 0.49
Monomeric hydrophicity matching model chain B : 0.67

3D Compatibility (PKB) : -51.05
2D Compatibility (Sec. Struct. Predict.) : 0.49
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.459

(partial model without unconserved sides chains):
PDB file : Tito_1U5K.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1U5K-query.scw
PDB file : Tito_Scwrl_1U5K.pdb: