Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSDLPQNDEYDRRFAGVAKIYGDSSFQHYEQSHVMVIGIGGVGSWAVEALARTGIGEITLVDMDVVAASNVNRQLPAMTSTLGCEKVEIMAERCRQINPRIKVNIIDDFLTPENVAELLNPVPDIVLDCIDDVKAKLALMLHCRFNKIPLIVSGGAGGKLDPLKIRVADLSKTEQDPMLAKLRSQLRAR-GICKKPKEKFGITCIYSIDN---PFSSADVCPSAGLRCGGYGSAVVVTSSFAMIAVAEVLKKLDLKKA
4D79 Chain:A ((6-265))------SDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYP---------------GFGAATMVTATFGFVAVSHALKKMMAKAA


General information:
TITO was launched using:
RESULT:

Template: 4D79.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1330 -168334 -126.57 -722.46
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.84

3D Compatibility (PKB) : -126.57
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.615

(partial model without unconserved sides chains):
PDB file : Tito_4D79.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4D79-query.scw
PDB file : Tito_Scwrl_4D79.pdb: