Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDGAMQGSYATALLKQQQLPESFQFYFKQKQHLSNTQELHQLHELVRPRLKIAIVTETWPPEINGVALSLLQLCQGLQKQGHKILLVRPEQKAKCHDFLPE---QECLVMSQAIPKYPTLQFGWPQYLKVSKAFEKFVPDVVHIVTEGPLGLTAMQAAK--AKDIPVSSGFHS----------PFQDFSRF-FDLAFLVKPIQKYLCWFHNNTQVTCVPSKDTEEALRGFGITCPLVVVGRGVDTTRFSPKHRSENLRQQWGVDSDTRVMLYVGRLSPEKEVQLIVESYAAMQNIQQQKTKLVVVGDGPD----LARLKALPEAKNVIFTGSLCGHDLAVAYASADVFVFASQVETFGNVVLEAMASGLPVIAYDYACAHQYLIHGVNGWLSPLGHKNHFIQQIYQLPSIQQL-REMGIQACHKV-QQSGWQLPVQQLEQAFYQVVKELSADFT
2JJM Chain:A ((2-373))------------------------------------------------KLKIGI---TCYP--GGSGVVGTELGKQLAERGHEIHFITSGLP----KVYPNIYFHEVTVN----FQYPPYDLALAS--KMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSLI---NETHELVKPNKDIQ-------------TVYNFIDE-RVYFKRDMTQLKKEYGIS---KILIHISNFRKVKRVQDVVQAFAKI--VTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGK--QDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYETIYYDVL--------


General information:
TITO was launched using:
RESULT:

Template: 2JJM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1865 -21899 -11.74 -64.98
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -11.74
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.462

(partial model without unconserved sides chains):
PDB file : Tito_2JJM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2JJM-query.scw
PDB file : Tito_Scwrl_2JJM.pdb: