Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKALPIAVAVVLGGAALVPVYYATQHPTTEVGHKADKNASPIQKISYVLGYEVAQQTPP---ELDTKAFVQGIHDVRNKQPSAYTQEDLKAAVAAYEKELQQKM-----QHQDKPEQAGTATDSADAQFLAENKTKAGVKTTASGLQYIITKEGTGKQPTAQSIVKVHYEGRLINGQVFDSSYKRGQPVEFPLNQVIPGWTEGLQLMKEGGKATFFIPSNLAYGPQELPG-IPANSTLIFDVELISVK
1FD9 Chain:A ((9-210))----------------------------------------TDKDKLSYSIGADLGKNFKNQGIDVNPEAMAKGMQDAMSGAQLALTEQQMKDVLNKFQKDLMAKRTAEFNKKADENKVKGEA-------FLTENKNKPGVVVLPSGLQYKVINSGNGVKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISVK


General information:
TITO was launched using:
RESULT:

Template: 1FD9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 604 31254 51.74 161.94
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : 51.74
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.573

(partial model without unconserved sides chains):
PDB file : Tito_1FD9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1FD9-query.scw
PDB file : Tito_Scwrl_1FD9.pdb: