Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRRFSCIVGSVFLAMTQAQAELVINGSTISSNATVPVTNSDTYTPNNNFQSCLANLRSQAIAAGVSGSTYDRYTQNLTPDYSVIDKLNYQPEFSTPIWDYLSGLVDEERVALGKQKLAQHRDVLNRASQVYGVPAETIVAVWGVESNFGDISGKYPLLQALGTLSCEGRRQSYFRTEFFATMRILRRGDLTEDQLKGSWAGAFGHTQFMPSTYERLAVDFDGDGRRDLVSSTADALASTANFLNKAGWQTGMPWGFEVQIPAGMSIDGEGRRSKKPLSSWSARGVTRIDGSPLIQGPLFGSTPAGLMAPAGPSGPVFLVFKNFDAIYSYNAAESYGLAIAHLSDRLRGAGPFVSSWPTDDPGTSRAERREIQQFLINRGYDIGAVDGLIGDKTRVAIRQEQTRLGLNPTGRAGQQILRAFRQEQARKMMQ
5AO8 Chain:A ((45-418))---------------------------------------------GQSFEQWRDAFRQQALAGGIDAQTFDRAFAGVQPDPAVVEADRSQPEFTRPVWKYLEGALDPLRVRQGQARLAQHARILGEVDARYAVDADAVVAIWGMESNYGSHMGNKNVIRSLATLAYEGRRPEFAHAQLLAALKILQHGDVPASFMIGSWAGAMGQTQFIPTTHNQYAVDFDGDGKRDIWGSPGDALASTANYLKASGWIAGQPWGFEVRLPAGFDYSLAELTIRKPLGEWQGMGVQGVNGGPLPSG--LSGEQASLLLPAGHRGPAFLVLHNFRAILKYNNSSAYALAVGLLADSFKGGGRIVGAWPLDDVPLSRSQRIELQRQLAARGHDPGAVDGIIGANTRKAIRACQQEFGWPADGYPTPALLDRLR---------


General information:
TITO was launched using:
RESULT:

Template: 5AO8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1965 -149670 -76.17 -400.19
target 2D structure prediction score : 0.74
Monomeric hydrophicity matching model chain A : 0.79

3D Compatibility (PKB) : -76.17
2D Compatibility (Sec. Struct. Predict.) : 0.74
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.517

(partial model without unconserved sides chains):
PDB file : Tito_5AO8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5AO8-query.scw
PDB file : Tito_Scwrl_5AO8.pdb: