Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMAKNIRPYLDHHPQIDPSCYIDEMSVIVGDVKLAENVSVWPFAVIRGDVNSIQIGKNSNVQDHCMLHVSHKNDTKPNGSPLIIGEDVTVGHHVTLHGCTIGNRVLVGINTVILDDVVIEDDVMIGAGSLVPPRKVLKSGYLYVGSPVQQVRPLTEKELAFLPYSARHYVKVQNNHKDNQIN
3VNP Chain:A ((3-170))----IYPYKGKTPQIAASAFIADYVTITGDVVIGEETSIWFNTVIRGDVAPTVIGNRVNIQDNSILHQSPNN-------PLIIEDGVTVGHQVILHSAIVRKNALIGMGSIILDRAEIGEGAFIGAGSLVPPGKKIPPNTLALGRPAKVVRELTEDDIREMERIRREYVEKGQYYKALQ--


General information:
TITO was launched using:
RESULT:

Template: 3VNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 983 -133116 -135.42 -792.35
target 2D structure prediction score : 0.45
Monomeric hydrophicity matching model chain A : 0.79

3D Compatibility (PKB) : -135.42
2D Compatibility (Sec. Struct. Predict.) : 0.45
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.510

(partial model without unconserved sides chains):
PDB file : Tito_3VNP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VNP-query.scw
PDB file : Tito_Scwrl_3VNP.pdb: