Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceKSYKAQKICHFTILKMYKNTWTFVRKDSAPADQTTTIEGIKVFFSKDCIPQHDYRGLYIEYNGFHHDVSQS
5MND Chain:A ((82-130))-----KLVCNWSGKEFLRETWTRFISEEFPITTDQ--EIMDLWFELQLRPMHPNRC---------------


General information:
TITO was launched using:
RESULT:

Template: 5MND.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 32 -5685 -177.64 -116.01
target 2D structure prediction score : 0.39
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : -177.64
2D Compatibility (Sec. Struct. Predict.) : 0.39
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.252

(partial model without unconserved sides chains):
PDB file : Tito_5MND.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5MND-query.scw
PDB file : Tito_Scwrl_5MND.pdb: