Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMYLRPVMNSSNSHFNEVDPTLINETIPLFEKVPFNPIYPSKFKFIDLFAGIGGFRLAFQNLGGRCVFSSEIDLAAQKTYTANFGDTPYGDITLESTKDAIPDNFDILCGGFPCQAFSIAGKRSGFEDTRGTLFFDVADIIKRKQPKAFFLENVKGLVSHDKGKTLRTILQVLRE-DLGYYVPEPKIINAKDFGVPQNRERIFIVGFHKDTGVHDFEYPTPTG-----KKVCFADVKEENVVPTK--YYLSNQYL-QTLERHKAHHESKGNGFGYAIIPDNSIANAIVVGGMGRERNLVIDHRITDYTPTTRIKGEVNRQGIRKMTPREWARLQGFPDNFKIIVSDAAAYKQFGNSVAVPAIQATANLILEKLKMK
8MHT Chain:A ((12-325))-----------------------------------------LRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDIT-QVNEKTIPDH-DILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHA---KVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSAYGGG----------IFAKTGGYLVNGKT-----RKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSLNFK


General information:
TITO was launched using:
RESULT:

Template: 8MHT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1554 -58857 -37.87 -192.97
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -37.87
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.499

(partial model without unconserved sides chains):
PDB file : Tito_8MHT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-8MHT-query.scw
PDB file : Tito_Scwrl_8MHT.pdb: