Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKLVNVTNSHSRLVLNQLENTDAHLVKVYTAGNTTIVYTEAPEHNEILL-----INDKRKIQPKEIEDAIKLFLR
5JA9 Chain:C ((62-100))--------------------------------GSRIIYYFLDEKRRFYLLTIYGKNEMSDLNANQRKQLMA----


General information:
TITO was launched using:
RESULT:

Template: 5JA9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 53 -2096 -39.54 -61.63
target 2D structure prediction score : 0.76
Monomeric hydrophicity matching model chain C : 0.59

3D Compatibility (PKB) : -39.54
2D Compatibility (Sec. Struct. Predict.) : 0.76
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.606

(partial model without unconserved sides chains):
PDB file : Tito_5JA9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5JA9-query.scw
PDB file : Tito_Scwrl_5JA9.pdb: