Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAWQNVEVVHVVAMDKNHCIGKGNALPWHISADLKHFKEITQGGVVIMGRKTLESMGRALPNRVNWVITRDINWHFDGVKIAYSIEDALNAALEDAKNTEKQALFIIGGGEIFKQTLSIADRLELTHVDLDVQGDAHYPTIPSEFH----KTASEQQVDEKSGTSFEFATYKK
2W9S Chain:C ((6-152))----------IVAHDKQRVIGYQNQLPWHLPNDLKHIKQLTTGNTLVMARKTFESIGKPLPNRRNVVLTNQASFHHEGVDVINSLDEIKELS---------GHVFIFGGQTLYEAMIDQVDDMYITVIDGKFQGDTFFP--PYTFEDWEVESSVEGQLDEKNTIPHTF-----


General information:
TITO was launched using:
RESULT:

Template: 2W9S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 590 -77697 -131.69 -543.33
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain C : 0.78

3D Compatibility (PKB) : -131.69
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.521

(partial model without unconserved sides chains):
PDB file : Tito_2W9S.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2W9S-query.scw
PDB file : Tito_Scwrl_2W9S.pdb: