Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKQILILAGDGIGPEIVGAAEKVLNKVNEKFNLSLTWEHGLLGGAAID---AHGEPYPAVTSEQAKKADAILLGAVGGPKWDTIERSIRPERGLLKIRSELNLFANLRPAILYPQLADASSLKPEIVAGLDILIVRELTGGIYFGQPRGIRELENGEKQ-GYNTDVYSESEIKRIAKVAFELAGLRGGK-VCSVDKANVLEVTELWKQTVTDLQQANYPNIQLSHMYVDNAAMQLVRAPKQFDVIVTGNLFGDILSDEAAMLTGSIGMLPSASLD--ENGKGMYEPCHGSAPDIAGQNVANPLATILSVAMMLRY----TFREEAAAKAIEDAVGQVLDQGLRTADIMSEGMTKVGTAEMGEAVVAALA
3FMX Chain:X ((5-361))-SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLAL--EFDTFEWASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWP--DKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVP--CALANRKVGDIDFVVVRENTEGEY--SSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALMLEFLGQGDERYQRAHDDMLNAIERVIADGSVTPDM---GGT-LSTQQVGAAISDTLA


General information:
TITO was launched using:
RESULT:

Template: 3FMX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain X - contact count / total energy / energy per contact / energy per residue : 1916 15383 8.03 44.46
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain X : 0.78

3D Compatibility (PKB) : 8.03
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.560

(partial model without unconserved sides chains):
PDB file : Tito_3FMX.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3FMX-query.scw
PDB file : Tito_Scwrl_3FMX.pdb: