Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRIILLGPPGAGKGTQAQLICKRYNIPQISTGDMLRAAIREGTELGLKAKSVMESGGLVSDELIIGL----VKERIAQPDCVNGCIFDGFPRTIPQAEALEK-EGISIDHVIEIDVP-DEEIVKRL--SGRRQHPASGRVYHVVYNPPKVEGKDDETGEDLVQRPDDQEETIRKRLASYHTETEQLVGFYQGRAASGENAPTYDKLDGLRTIEDVQKDLFNILDK
1AKE Chain:A ((1-214))MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIA-QEDCR---NGFLLDGFPRTIPQADAMKEA-GINVDYVLEFDV-PDELIVDRIVG--RRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGN--TKYAKVDGTKPVAEVRADLEKILG-


General information:
TITO was launched using:
RESULT:

Template: 1AKE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 969 10144 10.47 49.24
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain A : 0.87

3D Compatibility (PKB) : 10.47
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.87
QMean score : 0.551

(partial model without unconserved sides chains):
PDB file : Tito_1AKE.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1AKE-query.scw
PDB file : Tito_Scwrl_1AKE.pdb: