Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGMWCTLCTSYTYQTNKKYIVFLGGHFKMAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITTVLSKKNGGQAMAYDQIDGAPEERERGITISTAHVE--------------YETD--------------TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLSRQVGVPYIVVFLNKVDMVDDEELLELVEMEVRDL--LTEYEFPGDDVPVVAGSALKALEGDASYEEKILELMAAVDEYIPTPERD-NDKPFMMPVEDVFSITGRGT--------VATGRVERGQVRVGDEVEVVGIAEETSKTTVTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVLAKPGTITPHTKFSAEVYVLTKEEGGRHTPFFTNYRPQFYFRTTDVTGVVELPEGTEMVMPGDNVTMEVELIHPIAIENGTKFSIREGGRTVGAGVVTEIKA
2PMD Chain:B ((3-256))---------------------------------WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHS-------------EELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALS----QYRQIKQFTKGTW-AENVPIIPVSALHKINIDS--------LIEGIEEYIKTPYRDLSQKPVMLVIRS-FDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVL-----------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2PMD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1037 -27564 -26.58 -128.80
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain B : 0.67

3D Compatibility (PKB) : -26.58
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.465

(partial model without unconserved sides chains):
PDB file : Tito_2PMD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2PMD-query.scw
PDB file : Tito_Scwrl_2PMD.pdb: