Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MAKEHYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLGKKGLANPQDYASIDAAPEERERGITINTAHVE--------------YETEK--------------RHYAHIDAPGHADYVKNMITGAAQMDGAILVVSATD-GPMPQTREHILLSRQVGVKYLIVFLNKVDLVDDEELIDLVEMEVRELLSEYGFPGDDTPVIKGSALKALQGDPDAEAAIMELMDTVDEYIPTPERD-TDKPLLLPVEDVFSITGRGT--------VASGRIDRGAVRVGDEVEIV-GIKPETQKAVVTGVEMFRKTLDYGEAGDNVGVLLRGIQRDDIERGQVLAKPGSITPHTKFKAEVYVLTKEEGGRHTPFFNNYRPQFYFRTTDVTGTITLPEDTEMVMPGDNVTIDVDLIHPIAVENGTTFSIREGGRTVGSGIVTEIEA 2PMD Chain:B ((3-267)) -----WPKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSK-------------HSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYR-QIKQFTK--GTWAENVPIIPVSALHKINID--------SLIEGIEEYIKTPYRDLSQKPVMLVIRS-FDVNKPGTQFNELKGGVIGGSIIQGLFKVDQEIKVLPGLRVEKQGKV-------------------------------------------------------------------------------------------------------------------------------------------

General information: TITO was launched using: RESULT: Template: 2PMD.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1061 2930 2.76 12.96 target 2D structure prediction score : 0.65 Monomeric hydrophicity matching model chain B : 0.69 3D Compatibility (PKB) : 2.76 2D Compatibility (Sec. Struct. Predict.) : 0.65 1D Compatibility (Hydrophobicity) : 0.69 QMean score : 0.441

(partial model without unconserved sides chains): PDB file : Tito_2PMD.pdb: (Unconserved sides chains are recalculated) : Sequence: align-2PMD-query.scw PDB file : Tito_Scwrl_2PMD.pdb: