Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKKIILASAMSGVVLLLGACATTPKNTLAIQKENNQFEVTGIGKTNLIAKNNAVTAAQKTCSKSTTPVIVDEKTSYHGVLKDVV-SEKTGQMVEAAAGVIGTLTGKNASLAKDDDYQTTLTFYCKIN-----------------------------------------------
5T77 Chain:A ((4-470))LFSSILFSIATFFSRILGLFRDVLFAKYFGVSYELDAYFIAIMFPFFLRKVFGEGAMSSAFVPLYSEKSGEEKDKFLSSVINGFSLIILALVILSYFFPELIINLFGAGSSHETKILAKKLLLITSPSIYFIFLWAISYSILNTNNKFFWPALTPSISNITIIIGTFLSTKYGIISPTIGFLIGSILMFFSIIKSIIKHKYYFTIKHFPHFLKLFFPTFMTMVVSQINTVVDMNVVSFYDKGSISYLQYASRFYLLPYGLFAVSVSTVVLSKISNDRKNFNYHLNDALKTTLFFTIPSMVGLIFLSTPIIRFFYEHGAF--TSKDTLITSKILIAYTLG----LPFYGIYSTISRSYHAIKNTKTPFIAATIVSLSNIILDIIFGLKYGPIGVALATSIAGIIGVLYLLFSVKTFPIKDFLKISLNSLIMLFVIYLTDFTDNEFWFLIQILIGILVYLIFSSIFYRDLIRRFL


General information:
TITO was launched using:
RESULT:

Template: 5T77.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 189 -1465 -7.75 -12.21
target 2D structure prediction score : 0.38
Monomeric hydrophicity matching model chain A : 0.42

3D Compatibility (PKB) : -7.75
2D Compatibility (Sec. Struct. Predict.) : 0.38
1D Compatibility (Hydrophobicity) : 0.42
QMean score : 0.003

(partial model without unconserved sides chains):
PDB file : Tito_5T77.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5T77-query.scw
PDB file : Tito_Scwrl_5T77.pdb: