Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------------------------------MYSTHRSKTICSKM-ARAFPGYSVMFFMHKK-----------TLVLLLSTFC-------ASTYIHAKTDCYPSSPPVV-----KQLDQVYYGMNNLRIFYTTSSDNALTFQQDKNLNHIPDYVENIAIQANSIRKAWS--------VLGYQDPLNSP---RYKNDVKYIDIQIQKLNGLG-LAYDEPHRHINNPLKKNACALIILISNN------IPNLTTN---------------SSLIA-HELFHLY--TYGYTMFKQ--PWLTESLA------AWSEGIIRKDKLGIYGQRNLPENEEDFEK----YVLQRTYRTSQLWNRLTTLIDRSDGKLF--LPLSLMQQKYT--DGQPVFQDKYLKGTLFIRKFLENLGRQ---DQKISVLNNWNLYHWNEIDQNSAHFNEQILD---------TLLITLESTVERNIEKNK---------FKNLLKKIVKNKKTN-------------------------------------
5K5S Chain:A ((20-598))YGPDQRAQKKGDIILGGLFPIHFGVAAKDQDLKSRPESVECIRYNFRGFRWLQAMIFAIEEINSSPALLPNLTLGYRIFDTCNTVSKALEATLSFVAQNKIPSTIAVVGATGSGVSTAVANLLGLFYIPQVSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQHVVEVIQNSTAKVIVVFSSGPDLEPLIKEIVRRNITGKIWLASEAWASSSLIAMPQYFHVVGGTIGFALKAGQIPGFREFLKKVHPRKSVHNGFAKEFWEETFNCHPLCTGDENINSVETPYIDYTHLRISYNVYLAVYSIAHALQDIYTCLPGRGLFTNGSCADIKKVEAWQVLKHLRHL-QFTNNMGEQVTFDECGDLVGNYSIINWHLSPEDGSIVFKEVGYYNVYAKKGERLFINEEKILWSGFSREVPFSNCSRDCLAGTRKGIIEGEPTCCFECVECPDGEYSDETDASACNKCPDDFWSNENHTSC


General information:
TITO was launched using:
RESULT:

Template: 5K5S.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2075 49383 23.80 134.56
target 2D structure prediction score : 0.41
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 23.80
2D Compatibility (Sec. Struct. Predict.) : 0.41
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.122

(partial model without unconserved sides chains):
PDB file : Tito_5K5S.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5K5S-query.scw
PDB file : Tito_Scwrl_5K5S.pdb: