Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKIPLLTFARHKFVYVLLTLLFLALVYRDVLMTYFFFDIHAPDLAKFDGQAIKNDLLKSALDFRILQFNLGFYQSFIIPIIIVLLGFQYIELKNKVLRLSIGREVSYQGLKRKLTLQVASIPCLIYLVTVLIIAIITYFFGTFSPLGWNSLFSDGSGLQRLLDGEIKSYLFFTCVLLIGIFINAIYFLQIVDYVGNVTRSAITYLMFLWLGSMLLYSALPYYMVPMTSLMQASYGDVSLMKLFTPYILYIVPYMVLEKYEDNV
5G4D Chain:A ((5-37))-------------------------------YVVIVYDVAV-E--RV--NRVKKFLRRHLHWVQNSVFE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5G4D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 70 -17364 -248.06 -526.18
target 2D structure prediction score : 0.36
Monomeric hydrophicity matching model chain A : 0.36

3D Compatibility (PKB) : -248.06
2D Compatibility (Sec. Struct. Predict.) : 0.36
1D Compatibility (Hydrophobicity) : 0.36
QMean score : 0.456

(partial model without unconserved sides chains):
PDB file : Tito_5G4D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5G4D-query.scw
PDB file : Tito_Scwrl_5G4D.pdb: