Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNRQQIDVLVKQMNIDTAKGEVDARVQQIVVRLLGDLFQAIEDLDIQPSEVWKGLEYFTDAGQANELGLLAAGLGLEHYLDLRADEADAKAGMTGGTPRTIEGPLYVAGAPESVGFAHMDDGTETGKIDTLIIEGTVTDTDGNIIENAKVEVWHANSLGNYSFFDKS--QSDFNLRRTIFTDADGKYVALTTMPVGYGCPPEGTTQALLNKLGRHGNRPSHVHYFVSAPGYRKLTTQFNIEGDEYLWDDFAFATRDGLVATAVDVTDPAEIQRRGLD-HAFKHITFNIELVKEATAAPSTEVERRRASA
5VXT Chain:A ((41-323))----------------------NARTQQIVHRLLGDLFKAIDDLDITPDEVWAGVNYLNKLGQDGEAALLAAGLGLEKYLDIRMDAEDEAIGLDGGTPRTIEGPLYVAGAPVRDGVAKIDLDADEGA-GPLVIHGTVTGLDGKPVAGALVECWHANSHGFYSHFDPTGKQSDFNLRGAVKTGADGKYEFRTLMPVGYGCPPQGATQQLLDRLGRHGNRPAHVHFFVTSDGHRKLTTQFNIEGDPLIWDDFAYATREELIPP---VTAKAGGAALGLKADAYQDIEFNFVLTPRVEGKDNQIVERLRASA


General information:
TITO was launched using:
RESULT:

Template: 5VXT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1346 -10704 -7.95 -38.23
target 2D structure prediction score : 0.75
Monomeric hydrophicity matching model chain A : 0.82

3D Compatibility (PKB) : -7.95
2D Compatibility (Sec. Struct. Predict.) : 0.75
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.532

(partial model without unconserved sides chains):
PDB file : Tito_5VXT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5VXT-query.scw
PDB file : Tito_Scwrl_5VXT.pdb: