Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MSKRIIQSVLSVSVLASMMSMAFAAQNEQEQAEQTLEKPAEPVKLETIFVTAE--EQVKQSL--GVSVITKEDLAKLPVRNDISDYVRRMPGVNLTGNSATGQRGNNRQIDIRGMGPENTLILVDGKPINSRNSVRYGWKGERDTRGDSNWVPAEAIESIEVLRGPAAARYGSGAAGGVVNIITKKVTNETHGSVEFYTSQPEDSKEGSSNRVGFNVSG-PLIKDVLSYRLYGNYNKTEADDVDINKSIGSTAAGREGVKNKDISGRLAWQATDQQTVLLDVSSSKQGNIYSGDSQLNANAEADAILSQLIGKETNTMYRDSY--ALTHEGDWSWGKSKLVAQYDKTHNKRLPEGLAGSVEGKINSLDDKATSRLETLRFNGEANIPFEYYLPQVLTVGTEWVEDRFKDNVSTTQGKDSSGSGYGDQLAKGDRSKMESRIASAYIEDNLKVTDSTDVVLGL------------RFDDHSKSGSNWSPSLNITQKLNDNFTLKGGVAKAYKAPNMYQNAEGYLLSTNGNGCPANIESRCLLQGNGDLKPETSVNKELGIQFQRDIVNASLTWFRNDYKDKIVAGTHVVGTADGSSTNANTGAVTNTKWNILRWENTPKALIQGFEGSLGLDFGDIRWTNNFTYMMDSKDKQTGNPLSLVPIYTINSIFDYDITDQLDVNFVFTQYGRQKSRQFAENRLESGIGSGGANSALKPSTVKSYSTAGINVGYKFSDQISTRVGVSNLFDKQILRDSNSISQTYNEPGRAYYASLKYSF 2YSU Chain:A ((6-594)) ---------------------------------------------DTLVVTANRFEQPRSTVLAPTTVVTRQDIDRWQ-STSVNDVLRRLPGVDITQNGGSGQLSS---IFIRGTNASHVLVLIDGVRLNLA-----GVSGSADL----SQFPIALVQRVEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEISAGW----------GSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHG--------------DNDGFLSKTLYGALEHNFTDAWSGFV--------RGYGYDNRTNYDAYYSPGSPLL---DTRKLYSQSWDAGLRYNGELI--KSQLITSY--SHSKDY------NYDPHYGRYDSSAT-------------------LDEMKQYTVQWA-----NNVIVGHGSIGAGV---------DWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQTSAGWEFIEGYRFIASYGTSYKAPNLGQLYGFY--------------------GNPNLDPEKSKQWEGAFEGLTAGVNWRISGYRNDVSDLIDYDDHT-----------------------LKYYNEGKARIKGVEATANFDTGPLTHTVSYDY-VDARNAITDTPLLRRAKQQVKYQLDWQLYD-FDWGITYQYLGTRYDKDYSSYPYQT-VKMGGV------------SLWDLAVAYPVTSHLTVRGKIANLFDK----DYETV-YGYQTAGREYTLSGSYTF

General information: TITO was launched using: RESULT: Template: 2YSU.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 3362 176423 52.48 317.88 target 2D structure prediction score : 0.39 Monomeric hydrophicity matching model chain A : 0.71 3D Compatibility (PKB) : 52.48 2D Compatibility (Sec. Struct. Predict.) : 0.39 1D Compatibility (Hydrophobicity) : 0.71 QMean score : 0.186

(partial model without unconserved sides chains): PDB file : Tito_2YSU.pdb: (Unconserved sides chains are recalculated) : Sequence: align-2YSU-query.scw PDB file : Tito_Scwrl_2YSU.pdb: