Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSADTQHFTGTDQYIATDSLKLAVKAARALQKPLLVKGEPGTGKTLLAEQVAESLGLKLITWHIKSTTKAQQGLYEYDAVSRLRDSQLGDDRVYDIKNYIKPGKLWEAFTSEERCVLLIDEIDKADIEFPNDLLHELDKMSFY-VYETGETITATQRPIVIITSNNEKELPDAFLRRCFFHYIEFPDEATMREIISVHFPNISVTLVNEALQVFFKLREIPNLKKPPSTSELIDWLSLLMADDMPEDVLRNRDTSKAIPPLYGALIKNEQDVQLLERLAFMSRR
5C3C Chain:A ((38-247))---------------------ELYRAGYEARIPMMLKGPTGCGKSRFVEHMAWKLNRPLITIACNEDMTASDLVGR-------------------------DGPLTVA--ARIGAICYLDEIVEARQDTIVVIHPLTDHRRVLPLEKKGELVEAHPDFQIVISYNP--DLKQSTKQRFGALDFDYPKPDIEAEIVSHEA-GVDKDTAEKLVQIAQKARN------GLSTRLLVYAGKLIAK-------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5C3C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 867 -42817 -49.39 -233.97
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -49.39
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.601

(partial model without unconserved sides chains):
PDB file : Tito_5C3C.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5C3C-query.scw
PDB file : Tito_Scwrl_5C3C.pdb: