Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEQPISVTRSNFNDWMVPVFAPANFIPVRGEGSRIWDQENKEYIDFAGGIAVNALGHAHPVAVNALTEQAKKLWHVGNGYTNEPVLRLAKQLTENTFADKVFFCNSGAEANEAALKLARKVGLDSGV--AGKSGIVAFNNAFHGRTLFTVSAGGQPKYSQDFAPLPNGISHVAYNDLEAAKAVIN---EQTCAVIVEPVQGEGGVIPADIEFLKGLRELCDQFGALLIFDEVQTGVGRTGALYAYMNYGVVPDVLTTAKALGGG-FPVGAMLTTDKFAPHFSVGTHGTTYGGNPLASAVAGAVFEFINTPEVLEGVKHRHQYFLDALNALNAEYQVFDEIRGQGLLIGCVLKAEY---AGKAKDITTWAGEEGLLALIAGPNVVRFTPSLIIPEQDIDEGIARLKRALAKLAK
5VIU Chain:B ((15-419))----SEYFIELEEKHGAHNYHPLPVVLDRGEGVFVWDVEGKKYYDFLSAYSAVNQGHSHPKIVEALVEQASKLALTSRAFYNSKLGEYEQKITSLLGFDKVLPMNSGAEAVETAVKLARKWSYEVKGIAENAAKIIVCEN-------------------------TPGFIRIPYNDIAALEEVLSKEAGNIAAFLVEPIQGEAGVYVPNEGFLKQSSELCKKHNVLFIADEVQTGIARTGKLIACHHEDVQPDILILGKALSGGMYPVSAVLANNNIMDVIKPGQHGSTFGGNPLACAVAMAALDVVQDEKLSERAEKLGNLFRSEIEKLIEKTDLITKVRGKGLLNAILINDTPDSST--AWNLCLALKENGLLAKPTHGNIIRLAPPLVITEEQLLDCVKIIEKTILEF--


General information:
TITO was launched using:
RESULT:

Template: 5VIU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2038 -30349 -14.89 -81.80
target 2D structure prediction score : 0.67
Monomeric hydrophicity matching model chain B : 0.77

3D Compatibility (PKB) : -14.89
2D Compatibility (Sec. Struct. Predict.) : 0.67
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.522

(partial model without unconserved sides chains):
PDB file : Tito_5VIU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5VIU-query.scw
PDB file : Tito_Scwrl_5VIU.pdb: